PF13102


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13102, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13102
Description Phage integrase SAM-like domain

Occurence in the database

PF13102 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3453 FBDBKF_15610 53231 54400 1 xerC Tyrosine recombinase XerC Morganella morganii S1
1 group_3474 FBDBKF_16670 16781 17743 -1 Tyrosine-type recombinase/integrase Morganella morganii S1
2 group_3474 EHELCC_10790 196028 196990 1 Tyrosine-type recombinase/integrase Morganella morganii S2
3 group_3453 EHELCC_15970 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S2
4 group_3474 NLDBIP_11135 174299 175261 1 Tyrosine-type recombinase/integrase Morganella morganii S4
5 group_3453 NLDBIP_16400 26963 28132 -1 xerC Tyrosine recombinase XerC Morganella morganii S4
6 group_3474 LHKJJB_10220 16267 17229 -1 Tyrosine-type recombinase/integrase Morganella morganii S3
7 group_3453 LHKJJB_16405 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S3
8 group_3453 HKOGLL_16175 52531 53700 1 xerC Tyrosine recombinase XerC Morganella morganii S5
9 group_3474 HKOGLL_16385 16276 17238 -1 Tyrosine-type recombinase/integrase Morganella morganii S5