PF13023


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13023, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13023
Description HD domain

Occurence in the database

PF13023 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_822 FBDBKF_04125 9545 10150 1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases Morganella morganii S1
1 group_822 EHELCC_05415 69002 69607 1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases Morganella morganii S2
2 group_822 NLDBIP_05735 110067 110672 1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases Morganella morganii S4
3 group_822 LHKJJB_02615 87591 88196 1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases Morganella morganii S3
4 group_822 HKOGLL_06090 9455 10060 1 yfbR 5'-deoxynucleotidase YfbR and related HD superfamily hydrolases Morganella morganii S5
5 group_822 F4V73_RS08565 1767888 1768502 1 HD domain-containing protein Morganella psychrotolerans
6 group_822 PMI_RS09950 2156360 2156962 1 HD domain-containing protein Proteus mirabilis HI4320