PF12836


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12836, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12836
Description Helix-hairpin-helix motif

Occurence in the database

PF12836 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1629 FBDBKF_10730 113040 115370 -1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S1
1 group_2116 FBDBKF_15900 31895 32227 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S1
2 group_1629 EHELCC_15065 113030 115360 -1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S2
3 group_2116 EHELCC_18500 19334 19666 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S2
4 group_1629 NLDBIP_14895 113030 115360 -1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S4
5 group_2116 NLDBIP_17335 19334 19666 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S4
6 group_1629 LHKJJB_14450 26366 28696 1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S3
7 group_2116 LHKJJB_17325 36522 36854 -1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S3
8 group_1629 HKOGLL_13070 26366 28696 1 tex Transcriptional accessory protein Tex/SPT6 Morganella morganii S5
9 group_2116 HKOGLL_17070 19334 19666 1 comEA DNA uptake protein ComE or related DNA-binding protein Morganella morganii S5
10 group_1629 F4V73_RS14445 116749 119079 -1 Tex family protein Morganella psychrotolerans
11 group_2116 F4V73_RS16410 98406 98741 -1 helix-hairpin-helix domain-containing protein Morganella psychrotolerans
12 group_2116 PMI_RS00580 150760 151125 1 ComEA family DNA-binding protein Proteus mirabilis HI4320
13 group_1629 PMI_RS14280 3168856 3171189 -1 Tex family protein Proteus mirabilis HI4320