PF12566


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF12566, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF12566
Description Protein of unknown function (DUF3748)

Occurence in the database

PF12566 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1723 FBDBKF_12030 56603 57883 -1 Biopolymer transporter Tol Morganella morganii S1
1 group_1723 EHELCC_14275 76822 78102 1 Biopolymer transporter Tol Morganella morganii S2
2 group_1723 NLDBIP_15370 80759 82039 1 Biopolymer transporter Tol Morganella morganii S4
3 group_1723 LHKJJB_15240 56603 57883 -1 Biopolymer transporter Tol Morganella morganii S3
4 group_1723 HKOGLL_14360 43266 44546 -1 Biopolymer transporter Tol Morganella morganii S5
5 group_1723 F4V73_RS14625 158167 159450 1 DUF3748 domain-containing protein Morganella psychrotolerans
6 group_1723 PMI_RS14135 3137621 3138907 -1 DUF3748 domain-containing protein Proteus mirabilis HI4320