PF11939


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF11939, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF11939
Description [NiFe]-hydrogenase assembly, chaperone, HybE

Occurence in the database

PF11939 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2408 FBDBKF_19290 5999 6490 1 hybE hydrogenase-2 assembly chaperone Morganella morganii S1
1 group_2408 EHELCC_07575 253090 253581 1 hybE hydrogenase-2 assembly chaperone Morganella morganii S2
2 group_2408 NLDBIP_07900 252963 253454 1 hybE hydrogenase-2 assembly chaperone Morganella morganii S4
3 group_2408 LHKJJB_07435 216709 217200 1 hybE hydrogenase-2 assembly chaperone Morganella morganii S3
4 group_2408 HKOGLL_03495 16187 16678 -1 hybE hydrogenase-2 assembly chaperone Morganella morganii S5
5 group_2408 F4V73_RS12050 564709 565200 1 hybE hydrogenase-2 assembly chaperone Morganella psychrotolerans
6 group_2408 PMI_RS00175 58863 59357 1 hybE hydrogenase-2 assembly chaperone Proteus mirabilis HI4320