Homologs in group_2408

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19290 FBDBKF_19290 45.0 Morganella morganii S1 hybE hydrogenase-2 assembly chaperone
EHELCC_07575 EHELCC_07575 45.0 Morganella morganii S2 hybE hydrogenase-2 assembly chaperone
NLDBIP_07900 NLDBIP_07900 45.0 Morganella morganii S4 hybE hydrogenase-2 assembly chaperone
LHKJJB_07435 LHKJJB_07435 45.0 Morganella morganii S3 hybE hydrogenase-2 assembly chaperone
HKOGLL_03495 HKOGLL_03495 45.0 Morganella morganii S5 hybE hydrogenase-2 assembly chaperone
F4V73_RS12050 F4V73_RS12050 43.9 Morganella psychrotolerans hybE hydrogenase-2 assembly chaperone

Distribution of the homologs in the orthogroup group_2408

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2408

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8XBW0 6.19e-44 145 44 1 155 3 hybE Hydrogenase-2 operon protein HybE Escherichia coli O157:H7
P0AAN1 3.99e-43 143 43 1 155 1 hybE Hydrogenase-2 operon protein HybE Escherichia coli (strain K12)
P0AAN2 3.99e-43 143 43 1 155 3 hybE Hydrogenase-2 operon protein HybE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P48341 9.91e-14 68 29 1 101 3 hupJ Hydrogenase expression/formation protein HupJ Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q03009 1.76e-10 61 29 0 115 3 hupJ Probable rubredoxin HupJ Rhodobacter capsulatus
P28152 1.88e-09 57 30 4 122 3 hupJ Hydrogenase expression/formation protein HupJ Rhizobium leguminosarum bv. viciae
Q43958 9.72e-09 54 27 4 147 3 hupT Hydrogenase expression/formation protein HupT Azotobacter chroococcum mcd 1
P30781 6.59e-08 52 29 4 148 3 hoxT Hydrogenase expression/formation protein HoxT Azotobacter vinelandii

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00175
Feature type CDS
Gene hybE
Product hydrogenase-2 assembly chaperone
Location 58863 - 59357 (strand: 1)
Length 495 (nucleotides) / 164 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2408
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE

Protein Sequence

MSELNWDITGYDEPPIELLESSFREIAKKEMQALPFYRENIPVKAGGFTLFEKQWIGTILTPWMLELIVLPGPSQEWPRRKIGERIALALPCGQVKFVVGELANGAQYLACSLMSPLDRHLQGEQAVELAENSAKMALSLPVQTQSVTEVDLSRRSLFRGQLRS

Flanking regions ( +/- flanking 50bp)

AATATTTTGCGTGAACATGGGATCACCGTAACCCCTAAAGAGGTAACAGCATGAGTGAATTAAATTGGGATATCACGGGATACGATGAACCACCTATTGAATTACTTGAAAGCAGTTTTCGAGAGATTGCCAAAAAAGAGATGCAAGCATTGCCTTTTTATAGAGAAAATATTCCCGTAAAAGCGGGAGGATTTACTTTATTTGAAAAGCAATGGATTGGAACAATTTTAACGCCTTGGATGCTAGAGCTTATTGTGTTGCCCGGGCCATCACAAGAGTGGCCAAGACGTAAAATTGGTGAGCGTATCGCCTTAGCGCTTCCTTGTGGTCAGGTTAAATTTGTCGTTGGTGAACTTGCTAATGGTGCTCAATATCTGGCTTGTTCATTAATGTCGCCACTTGATCGCCATTTACAAGGTGAGCAAGCGGTTGAGTTGGCAGAAAACAGTGCAAAAATGGCTCTTTCTCTTCCTGTTCAGACACAATCCGTCACAGAAGTTGATTTAAGTCGGCGTTCCCTGTTTCGTGGTCAGTTAAGATCATAATGTAGAACGTTTACGCGACACCGAGTCAAATTCTTCTTATTGAATAGTCA