Homologs in group_2408

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19290 FBDBKF_19290 78.5 Morganella morganii S1 hybE hydrogenase-2 assembly chaperone
EHELCC_07575 EHELCC_07575 78.5 Morganella morganii S2 hybE hydrogenase-2 assembly chaperone
NLDBIP_07900 NLDBIP_07900 78.5 Morganella morganii S4 hybE hydrogenase-2 assembly chaperone
LHKJJB_07435 LHKJJB_07435 78.5 Morganella morganii S3 hybE hydrogenase-2 assembly chaperone
HKOGLL_03495 HKOGLL_03495 78.5 Morganella morganii S5 hybE hydrogenase-2 assembly chaperone
PMI_RS00175 PMI_RS00175 43.9 Proteus mirabilis HI4320 hybE hydrogenase-2 assembly chaperone

Distribution of the homologs in the orthogroup group_2408

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2408

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAN1 2.52e-81 240 71 1 155 1 hybE Hydrogenase-2 operon protein HybE Escherichia coli (strain K12)
P0AAN2 2.52e-81 240 71 1 155 3 hybE Hydrogenase-2 operon protein HybE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XBW0 2.66e-81 240 71 1 155 3 hybE Hydrogenase-2 operon protein HybE Escherichia coli O157:H7
P28152 2.25e-09 56 28 2 107 3 hupJ Hydrogenase expression/formation protein HupJ Rhizobium leguminosarum bv. viciae
P48341 2.55e-07 51 26 2 96 3 hupJ Hydrogenase expression/formation protein HupJ Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P30781 1.93e-06 48 27 4 142 3 hoxT Hydrogenase expression/formation protein HoxT Azotobacter vinelandii
Q03009 2.24e-06 49 22 0 105 3 hupJ Probable rubredoxin HupJ Rhodobacter capsulatus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12050
Feature type CDS
Gene hybE
Product hydrogenase-2 assembly chaperone
Location 564709 - 565200 (strand: 1)
Length 492 (nucleotides) / 163 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2408
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE

Protein Sequence

MSDDIQGFQNSPVAQIKTAFEKIAGDAMQQLTFLHPSMPVYVTNFTLFEGQWTGCVITPWMFSVLIFPGPGQTWTARKVSEKIGLHLPYGTMTFTVGELDGVSQYLTCSLLSPLPHSLAAEEGMRLADDCARMLLSLPVSDPDAPQMAGRREVFLRHAERGHA

Flanking regions ( +/- flanking 50bp)

GGCGGCACTGCGTGAATCAGGTGTTGACGCAATTTTAAAGGAGCCGGCACATGTCTGATGATATTCAGGGCTTTCAGAACAGCCCGGTGGCACAGATAAAAACGGCATTTGAGAAAATCGCCGGTGATGCGATGCAACAGCTTACTTTTCTGCATCCGTCGATGCCGGTCTATGTCACAAATTTTACCTTGTTTGAAGGACAGTGGACGGGATGTGTGATTACGCCGTGGATGTTCAGCGTGCTGATTTTCCCGGGACCCGGACAAACCTGGACCGCGCGTAAGGTCAGTGAAAAAATCGGGCTGCATCTGCCGTACGGCACCATGACATTTACTGTCGGGGAGCTGGACGGTGTATCGCAGTATCTCACCTGCTCACTGTTATCACCGCTGCCGCATTCACTGGCAGCGGAAGAGGGAATGCGGCTGGCAGATGATTGCGCGCGTATGTTGCTTTCGCTGCCGGTAAGTGATCCGGACGCGCCGCAGATGGCAGGTCGCCGCGAGGTATTCCTCCGTCACGCGGAACGCGGGCATGCATGAGTTATCACTCTGCATGAGTGCGGCGGATATTATCCGCGAACAGGCGCAGG