PF08448


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08448, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08448
Description PAS fold

Occurence in the database

PF08448 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_713 FBDBKF_03095 17386 19719 -1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S1
1 group_1735 FBDBKF_12105 75989 77038 1 glnL nitrogen regulation protein NR(II) Morganella morganii S1
2 group_713 EHELCC_07440 227384 229717 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S2
3 group_1735 EHELCC_14200 57667 58716 -1 glnL nitrogen regulation protein NR(II) Morganella morganii S2
4 group_713 NLDBIP_07765 227257 229590 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S4
5 group_1735 NLDBIP_15295 61604 62653 -1 glnL nitrogen regulation protein NR(II) Morganella morganii S4
6 group_713 LHKJJB_07300 191003 193336 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S3
7 group_1735 LHKJJB_15315 75989 77038 1 glnL nitrogen regulation protein NR(II) Morganella morganii S3
8 group_713 HKOGLL_03630 40051 42384 -1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella morganii S5
9 group_1735 HKOGLL_14435 62652 63701 1 glnL nitrogen regulation protein NR(II) Morganella morganii S5
10 group_713 F4V73_RS11825 519430 521763 1 arcB aerobic respiration two-component sensor histidine kinase ArcB Morganella psychrotolerans
11 group_1735 F4V73_RS14535 137131 138180 -1 glnL nitrogen regulation protein NR(II) Morganella psychrotolerans