PF08279


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08279, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08279
Description HTH domain

Occurence in the database

PF08279 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3029 FBDBKF_18060 13461 14159 -1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S1
1 group_2447 FBDBKF_20345 1555 2535 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S1
2 group_3029 EHELCC_16760 13461 14159 -1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S2
3 group_2447 EHELCC_19685 1555 2535 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S2
4 group_3029 NLDBIP_17690 41607 42305 1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S4
5 group_2447 NLDBIP_19670 2048 3028 -1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S4
6 group_3029 LHKJJB_17610 41607 42305 1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S3
7 group_2447 LHKJJB_19630 1555 2535 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S3
8 group_3029 HKOGLL_17425 41607 42305 1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains Morganella morganii S5
9 group_2447 HKOGLL_19550 2048 3028 -1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella morganii S5
10 group_3029 F4V73_RS10210 152388 153083 -1 YafY family protein Morganella psychrotolerans
11 group_2447 F4V73_RS18870 1557 2537 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Morganella psychrotolerans
12 group_2447 PMI_RS16095 3576871 3577833 1 birA bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA Proteus mirabilis HI4320