Homologs in group_3034

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18060 FBDBKF_18060 81.4 Morganella morganii S1 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
EHELCC_16760 EHELCC_16760 81.4 Morganella morganii S2 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
NLDBIP_17690 NLDBIP_17690 81.4 Morganella morganii S4 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
LHKJJB_17610 LHKJJB_17610 81.4 Morganella morganii S3 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains
HKOGLL_17425 HKOGLL_17425 81.4 Morganella morganii S5 yobV putative DNA-binding transcriptional regulator YobV, contains HTH and WYL domains

Distribution of the homologs in the orthogroup group_3034

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3034

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0QS56 1.36e-15 77 31 5 203 1 siwR Stress-involved WYL domain-containing regulator Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O34920 0.000123 45 25 8 241 4 yobV Uncharacterized HTH-type transcriptional regulator YobV Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10210
Feature type CDS
Gene -
Product YafY family protein
Location 152388 - 153083 (strand: -1)
Length 696 (nucleotides) / 231 (amino acids)
In genomic island GI65

Contig

Accession NZ_VXKB01000002
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3034
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF08279 HTH domain
PF13280 WYL domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2378 Transcription (K) K Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains

Protein Sequence

MTRTQRLLTLLQILKENRYPVTAESLASQLQISVRSIYRDIESLRCQGAEITGEAGIGYQLKSGLLLPPLIFDVNELEALILGLRWVQSNADDELKASAKRAENKINSVVENESQVIFSQSTLFALSTQLTQVDNQIAKELRRSLREELKAKIDYQDEKKQLSSRVIWPVAVGYMKDVQVLAAWCELRQNYRHFRLDRIGSYTVLTDKLPYPKHYLLERWRKDILCIPNII

Flanking regions ( +/- flanking 50bp)

ATGATGCCCTCATACAACCGCGTCACAGACAACCACCGGCTGATACCTTAATGACCCGAACCCAGCGCCTGCTCACGTTATTACAGATCCTGAAAGAAAATCGCTATCCTGTGACTGCGGAATCCCTTGCCTCACAATTACAAATCAGTGTGCGATCTATCTACCGGGATATTGAATCATTACGTTGCCAGGGTGCTGAAATTACCGGAGAAGCCGGCATCGGCTATCAGCTGAAATCAGGCTTATTACTGCCGCCACTGATATTTGATGTCAATGAACTGGAAGCGCTGATCCTCGGATTACGCTGGGTACAAAGTAACGCAGATGACGAACTGAAAGCCTCGGCAAAGCGTGCTGAAAATAAAATTAATTCTGTTGTTGAAAATGAATCTCAGGTGATATTCAGCCAGAGCACTTTATTTGCCCTCTCAACACAACTCACTCAGGTTGATAATCAAATCGCCAAAGAATTACGCCGCAGCCTGCGGGAAGAACTGAAAGCAAAAATTGATTATCAGGATGAAAAAAAACAATTAAGCAGCCGGGTTATCTGGCCGGTTGCTGTCGGATATATGAAAGACGTTCAGGTGCTCGCCGCCTGGTGTGAATTACGACAAAATTACCGGCACTTCCGGCTGGACAGAATCGGCAGCTATACTGTTCTGACAGATAAACTACCTTATCCCAAACATTATTTACTCGAACGCTGGCGTAAAGATATCCTGTGTATACCCAACATCATTTAAGATGCAGGAAGGCCAGACGGGGAGCATACATCAGTATGTGACCCGGCAGG