PF08238


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08238, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 23 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08238
Description Sel1 repeat

Occurence in the database

PF08238 is associated with 23 different proteins (see tab "Protein list" and "Profile")
The 23 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2467 FBDBKF_00170 28358 29062 -1 Sel1 repeat family protein Morganella morganii S1
1 group_762 FBDBKF_03455 97282 97752 1 tPR TPR repeat Morganella morganii S1
2 group_2409 FBDBKF_19320 17507 22189 -1 tPR TPR repeat Morganella morganii S1
3 group_2467 EHELCC_01375 279806 280510 1 Sel1 repeat family protein Morganella morganii S2
4 group_762 EHELCC_07080 149351 149821 -1 tPR TPR repeat Morganella morganii S2
5 group_2409 EHELCC_07605 264598 269280 -1 tPR TPR repeat Morganella morganii S2
6 group_2467 NLDBIP_02085 399626 400330 -1 Sel1 repeat family protein Morganella morganii S4
7 group_762 NLDBIP_07405 149224 149694 -1 tPR TPR repeat Morganella morganii S4
8 group_2409 NLDBIP_07930 264471 269153 -1 tPR TPR repeat Morganella morganii S4
9 group_2467 LHKJJB_03600 6867 7571 -1 Sel1 repeat family protein Morganella morganii S3
10 group_762 LHKJJB_06940 112970 113440 -1 tPR TPR repeat Morganella morganii S3
11 group_2409 LHKJJB_07465 228217 232899 -1 tPR TPR repeat Morganella morganii S3
12 group_2467 HKOGLL_03445 280011 280715 1 Sel1 repeat family protein Morganella morganii S5
13 group_2409 HKOGLL_03465 488 5170 1 tPR TPR repeat Morganella morganii S5
14 group_762 HKOGLL_03990 119947 120417 1 tPR TPR repeat Morganella morganii S5
15 group_3971 F4V73_RS00785 162621 163361 -1 SEL1-like repeat protein Morganella psychrotolerans
16 group_332 F4V73_RS08470 1749382 1750500 1 SPOR domain-containing protein Morganella psychrotolerans
17 group_762 F4V73_RS11440 430934 431773 -1 tetratricopeptide repeat protein Morganella psychrotolerans
18 group_762 F4V73_RS11450 432933 433709 1 tetratricopeptide repeat protein Morganella psychrotolerans
19 group_2409 F4V73_RS16880 206154 210824 1 SEL1-like repeat protein Morganella psychrotolerans
20 group_2467 PMI_RS00035 15844 16827 1 SEL1-like repeat protein Proteus mirabilis HI4320
21 group_4488 PMI_RS09495 2069390 2071633 -1 hypothetical protein Proteus mirabilis HI4320
22 group_2409 PMI_RS19655 2071796 2072248 -1 hypothetical protein Proteus mirabilis HI4320