Homologs in group_2409

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19320 FBDBKF_19320 46.6 Morganella morganii S1 tPR TPR repeat
EHELCC_07605 EHELCC_07605 46.6 Morganella morganii S2 tPR TPR repeat
NLDBIP_07930 NLDBIP_07930 46.6 Morganella morganii S4 tPR TPR repeat
LHKJJB_07465 LHKJJB_07465 46.6 Morganella morganii S3 tPR TPR repeat
HKOGLL_03465 HKOGLL_03465 46.6 Morganella morganii S5 tPR TPR repeat
F4V73_RS16880 F4V73_RS16880 46.6 Morganella psychrotolerans - SEL1-like repeat protein

Distribution of the homologs in the orthogroup group_2409

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2409

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9D4C6 4.45e-05 45 35 5 110 2 Lrp2bp LRP2-binding protein Mus musculus
Q10NT7 6.24e-05 45 37 2 77 2 HRD3 ERAD-associated E3 ubiquitin-protein ligase component HRD3 Oryza sativa subsp. japonica
Q569C2 0.000104 44 32 3 91 2 Lrp2bp LRP2-binding protein Rattus norvegicus
Q9P2M1 0.000301 43 32 4 110 1 LRP2BP LRP2-binding protein Homo sapiens
Q4R3N2 0.000424 42 32 3 96 2 LRP2BP LRP2-binding protein Macaca fascicularis
A5PLI4 0.000595 42 33 4 105 2 lrp2bp LRP2-binding protein Danio rerio

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS19655
Feature type CDS
Gene -
Product hypothetical protein
Location 2071796 - 2072248 (strand: -1)
Length 453 (nucleotides) / 150 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2409
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF08238 Sel1 repeat

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0790 General function prediction only (R) R TPR repeat

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07126 uncharacterized protein - -

Protein Sequence

MSRKIKNILISIFLVFMALGFYLNKNQIQPQSKPNGYSYYQKGDYKEAFNYFSQHAESDPQAAFSLAMMYWDGIGVDKNALASQKWLIKSANLQNKNALYNLGYLRNKGLIQSPTDDAQGLTSLTKAADLGSSIAKDFLHDLNFPVIYYD

Flanking regions ( +/- flanking 50bp)

TACTATTGTGCTATATTTATATAAAAAGAATGAGCTTTAAAAGGAATATTATGTCTCGTAAAATTAAAAATATACTTATCTCCATTTTTTTAGTATTTATGGCCTTGGGGTTTTATCTCAATAAAAATCAAATCCAACCACAGTCAAAGCCAAATGGTTATAGCTATTATCAAAAAGGTGACTATAAAGAGGCGTTTAATTATTTTTCACAACATGCGGAAAGTGATCCGCAAGCAGCATTTAGTTTAGCAATGATGTATTGGGATGGCATAGGGGTTGATAAAAATGCCTTAGCTTCACAAAAATGGTTAATAAAATCAGCAAATTTACAAAATAAAAATGCACTTTATAATTTAGGATATTTACGTAACAAAGGATTAATCCAAAGTCCTACTGATGATGCTCAAGGATTAACGTCATTAACTAAAGCTGCTGATTTAGGCTCTTCAATAGCGAAAGATTTTTTACATGACCTTAATTTTCCTGTGATTTATTATGATTAAAAAGAATATACGCTACTCCCTATTTATGGTGAGCAATCTTGGTCTGAAAA