PF07972


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF07972, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF07972
Description NrdI Flavodoxin like

Occurence in the database

PF07972 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1565 FBDBKF_10145 118983 119399 1 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI Morganella morganii S1
1 group_1565 EHELCC_04945 310948 311364 1 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI Morganella morganii S2
2 group_1565 NLDBIP_04945 310744 311160 1 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI Morganella morganii S4
3 group_1565 LHKJJB_13685 24218 24634 -1 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI Morganella morganii S3
4 group_1565 HKOGLL_12850 119764 120180 1 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI Morganella morganii S5
5 group_1565 F4V73_RS00195 51766 52188 -1 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI Morganella psychrotolerans
6 group_1565 PMI_RS02045 484754 485158 -1 nrdI class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI Proteus mirabilis HI4320