Orthogroup:group_1613



Homologs in group_1613

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10615 FBDBKF_10615 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_14950 EHELCC_14950 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_14780 NLDBIP_14780 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_14565 LHKJJB_14565 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13185 HKOGLL_13185 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS07900 F4V73_RS07900 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS14325 F4V73_RS14325 Morganella psychrotolerans - helix-turn-helix transcriptional regulator

Distribution of group_1613 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1613 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1613

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1613.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hipB 5
2 - 2

Product

# Product Occurence
1 Transcriptional regulator, contains XRE-family HTH domain 5
2 helix-turn-helix transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 7 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 7 Helix-turn-helix

Annotations of the 11 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator ImmR 1
HTH-type transcriptional regulator SlrR 1
Uncharacterized HTH-type transcriptional regulator MT0491 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Rv0474 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator y4aM 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 91
Max length 110
Mean length (sd) 107.3 (7.2)
Median length 110.0

Protein length distribution