PF06892


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06892, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06892
Description Phage regulatory protein CII (CP76)

Occurence in the database

PF06892 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_159 FBDBKF_12405 6043 6522 -1 ymfL YmfL family putative regulatory protein Morganella morganii S1
1 group_159 FBDBKF_18725 25215 25679 -1 ymfL YmfL family putative regulatory protein Morganella morganii S1
2 group_159 EHELCC_15300 25215 25679 -1 ymfL YmfL family putative regulatory protein Morganella morganii S2
3 group_159 EHELCC_19170 6598 7062 -1 ymfL YmfL family putative regulatory protein Morganella morganii S2
4 group_159 NLDBIP_15830 25215 25679 -1 ymfL YmfL family putative regulatory protein Morganella morganii S4
5 group_159 NLDBIP_19140 12537 13001 -1 ymfL YmfL family putative regulatory protein Morganella morganii S4
6 group_159 LHKJJB_16010 91007 91471 1 ymfL YmfL family putative regulatory protein Morganella morganii S3
7 group_159 LHKJJB_19030 12537 13001 -1 ymfL YmfL family putative regulatory protein Morganella morganii S3
8 group_159 HKOGLL_15130 90219 90683 1 ymfL YmfL family putative regulatory protein Morganella morganii S5
9 group_159 PMI_RS04450 991513 991971 1 YmfL family putative regulatory protein Proteus mirabilis HI4320