PF06808


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06808, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06808
Description Tripartite ATP-independent periplasmic transporter, DctM component

Occurence in the database

PF06808 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1609 FBDBKF_10555 69710 71020 1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component Morganella morganii S1
1 group_1609 EHELCC_14890 69700 71010 1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component Morganella morganii S2
2 group_1609 NLDBIP_14720 69700 71010 1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component Morganella morganii S4
3 group_1609 LHKJJB_14625 70716 72026 -1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component Morganella morganii S3
4 group_1609 HKOGLL_13245 70716 72026 -1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component Morganella morganii S5
5 group_1609 F4V73_RS14265 72180 73490 1 TRAP transporter large permease Morganella psychrotolerans
6 group_1609 PMI_RS05130 1119798 1121765 -1 TRAP transporter permease Proteus mirabilis HI4320