Homologs in group_2862

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10555 FBDBKF_10555 97.7 Morganella morganii S1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
EHELCC_14890 EHELCC_14890 97.7 Morganella morganii S2 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
NLDBIP_14720 NLDBIP_14720 97.7 Morganella morganii S4 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
LHKJJB_14625 LHKJJB_14625 97.7 Morganella morganii S3 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
HKOGLL_13245 HKOGLL_13245 97.7 Morganella morganii S5 dctQ TRAP-type C4-dicarboxylate transport system, large permease component

Distribution of the homologs in the orthogroup group_2862

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2862

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P40800 6.14e-172 491 65 2 432 3 ygiK Uncharacterized protein YgiK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9KR66 3.23e-90 283 41 3 429 1 siaM Sialic acid TRAP transporter large permease protein SiaM Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q312S1 2.19e-88 284 40 4 421 1 dctMQ Isethionate TRAP transporter permease protein DctMQ Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
Q4QP40 1.97e-82 268 35 2 416 3 siaT Sialic acid TRAP transporter permease protein SiaT Haemophilus influenzae (strain 86-028NP)
P44543 2.57e-82 268 35 2 416 1 siaT Sialic acid TRAP transporter permease protein SiaT Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HU16 4.51e-81 259 39 2 410 1 dctM C4-dicarboxylate TRAP transporter large permease protein DctM Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q4TVS0 5.78e-81 264 34 2 416 3 siaT Sialic acid TRAP transporter permease protein SiaT Haemophilus influenzae
O07838 1.3e-80 258 35 4 437 1 dctM C4-dicarboxylate TRAP transporter large permease protein DctM Rhodobacter capsulatus
P55571 4.1e-74 241 36 4 416 3 NGR_a02470 Uncharacterized protein y4mL Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P37675 7.64e-71 233 37 3 382 3 yiaN 2,3-diketo-L-gulonate TRAP transporter large permease protein YiaN Escherichia coli (strain K12)
P44483 1.6e-70 231 35 2 376 3 HI_0050 Putative TRAP transporter large permease protein HI_0050 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44993 2.13e-70 231 37 4 420 3 HI_1029 Putative TRAP transporter large permease protein HI_1029 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9KQS1 1.68e-67 224 34 4 437 3 dctM C4-dicarboxylate TRAP transporter large permease protein DctM Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q5LUA9 6.14e-56 194 33 1 426 1 uehC Ectoine/5-hydroxyectoine TRAP transporter large permease protein UehC Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
E1VBK3 1.51e-54 190 33 1 417 1 teaC Ectoine TRAP transporter large permease protein TeaC Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
Q56347 3.55e-27 110 37 3 205 3 dctM Putative dicarboxylate transporter subunit (Fragment) Paracoccus pantotrophus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14265
Feature type CDS
Gene -
Product TRAP transporter large permease
Location 72180 - 73490 (strand: 1)
Length 1311 (nucleotides) / 436 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000004
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2862
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF06808 Tripartite ATP-independent periplasmic transporter, DctM component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1593 Carbohydrate transport and metabolism (G) G TRAP-type C4-dicarboxylate transport system, large permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11690 TRAP-type transport system large permease protein Two-component system -

Protein Sequence

MDWYVIAALFGTFAFLLVLSVPVSFAIGLSSLVAIAMTLPLDAAITVVAQRMAAGVDNFSLLAIPFFILAGNIMNQGGIAARLINVAKVIGGRLPGSLLHVNIMANMLFGAISGSAVASAAAVGGTMSPMQKKEGYDPELSAAVNIASCPSGLLIPPSNTLIVYSLVSGGTSIAALFLAGYIPGILMGLSLMVVSGIIAKKRGYPVAPRATWNEFLVTVWKAVPSLMLIVVIMGGIIGGIFTATEASAIAVIYSFVLAVIIYREVSFSRLPQIILESAVTTSIVLLLIGASMGMSWAMANADLPYLIADGLMAISDNALTILLVINIILLIVGIFMDMTPAVLIFTPIFLPVAMDLGIDPVHFGIIMTFNLAIGICTPPVGSALFVGCSVGGVSIDKVLKPLIPMYAALIAALAVVTYFPQLSLWLPELVLNYTPS

Flanking regions ( +/- flanking 50bp)

CACATGCTGAACTGACTGATAGCCAATAATGGTGCGATGAGAGGTTAATTATGGATTGGTATGTTATTGCCGCGCTCTTCGGCACCTTTGCATTTCTGTTGGTACTCAGTGTGCCGGTTTCTTTTGCTATCGGCCTGTCATCTTTAGTCGCGATAGCGATGACTCTGCCGCTGGACGCTGCTATTACGGTTGTAGCACAGCGCATGGCGGCAGGGGTGGATAACTTTTCTCTGCTGGCAATTCCGTTCTTTATCCTTGCGGGTAACATTATGAACCAGGGCGGTATTGCCGCGCGGTTAATTAATGTCGCGAAGGTGATTGGCGGGCGTTTACCGGGTTCGCTGTTGCATGTGAATATCATGGCAAACATGTTATTCGGTGCAATTTCAGGCTCAGCGGTTGCTTCTGCCGCCGCCGTTGGTGGCACTATGTCGCCGATGCAGAAGAAAGAAGGCTATGACCCAGAGCTGTCCGCTGCGGTGAATATTGCATCCTGCCCGTCAGGGTTGCTTATCCCGCCGAGTAATACACTGATTGTATATTCCCTGGTATCAGGCGGAACCTCTATTGCCGCCCTGTTTCTGGCGGGATATATCCCGGGCATCCTGATGGGATTGTCACTGATGGTTGTCTCCGGGATCATTGCGAAAAAACGGGGATATCCGGTTGCACCGCGCGCGACCTGGAATGAGTTTTTAGTTACAGTCTGGAAAGCGGTTCCTTCCCTGATGCTGATTGTGGTAATCATGGGCGGGATTATCGGCGGTATTTTTACCGCCACAGAAGCCTCAGCAATTGCCGTTATCTATAGTTTTGTACTGGCGGTGATTATTTACCGTGAAGTCAGTTTCAGCCGTTTACCGCAAATTATCCTGGAATCCGCCGTTACCACGTCAATTGTTTTGTTATTGATTGGTGCATCTATGGGCATGTCCTGGGCAATGGCAAACGCTGACCTGCCGTATCTGATTGCTGACGGGTTAATGGCGATTTCAGATAATGCACTGACTATTCTGCTGGTGATTAACATCATCCTGCTGATTGTCGGGATCTTTATGGATATGACACCGGCGGTTCTGATTTTTACCCCGATTTTCCTGCCGGTTGCGATGGATCTGGGCATTGACCCGGTTCACTTCGGGATAATCATGACATTCAACCTGGCTATCGGTATCTGTACACCGCCGGTTGGTAGTGCGTTGTTTGTCGGGTGCTCTGTGGGGGGCGTCAGTATTGATAAGGTGCTGAAGCCATTGATCCCTATGTACGCGGCATTGATCGCTGCATTAGCGGTTGTGACCTACTTCCCTCAGCTCAGCCTGTGGTTACCTGAGCTGGTTTTAAACTATACGCCATCATAAGTTGTTCTCCGGTGTTCATTTCTGTCTCAGGGATGTGCACCGGATAATAA