Homologs in group_1609

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10555 FBDBKF_10555 25.8 Morganella morganii S1 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
EHELCC_14890 EHELCC_14890 25.8 Morganella morganii S2 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
NLDBIP_14720 NLDBIP_14720 25.8 Morganella morganii S4 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
LHKJJB_14625 LHKJJB_14625 25.8 Morganella morganii S3 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
HKOGLL_13245 HKOGLL_13245 25.8 Morganella morganii S5 dctQ TRAP-type C4-dicarboxylate transport system, large permease component
F4V73_RS14265 F4V73_RS14265 26.0 Morganella psychrotolerans - TRAP transporter large permease

Distribution of the homologs in the orthogroup group_1609

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1609

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9HU16 7.63e-13 74 25 9 404 1 dctM C4-dicarboxylate TRAP transporter large permease protein DctM Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O07838 5.79e-11 68 24 7 348 1 dctM C4-dicarboxylate TRAP transporter large permease protein DctM Rhodobacter capsulatus
Q9KQS1 8.69e-11 68 26 10 401 3 dctM C4-dicarboxylate TRAP transporter large permease protein DctM Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q312S1 9.29e-11 68 26 10 374 1 dctMQ Isethionate TRAP transporter permease protein DctMQ Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20)
P44993 1.25e-09 64 26 4 324 3 HI_1029 Putative TRAP transporter large permease protein HI_1029 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44483 1.82e-08 60 25 15 358 3 HI_0050 Putative TRAP transporter large permease protein HI_0050 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9KR66 2.12e-08 60 26 6 268 1 siaM Sialic acid TRAP transporter large permease protein SiaM Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q4QP40 6.41e-08 59 23 14 393 3 siaT Sialic acid TRAP transporter permease protein SiaT Haemophilus influenzae (strain 86-028NP)
P44543 8.83e-08 58 23 14 393 1 siaT Sialic acid TRAP transporter permease protein SiaT Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4TVS0 1.18e-07 58 23 14 393 3 siaT Sialic acid TRAP transporter permease protein SiaT Haemophilus influenzae
P55571 0.000559 46 26 5 259 3 NGR_a02470 Uncharacterized protein y4mL Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P37675 0.000626 46 22 8 353 3 yiaN 2,3-diketo-L-gulonate TRAP transporter large permease protein YiaN Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05130
Feature type CDS
Gene -
Product TRAP transporter permease
Location 1119798 - 1121765 (strand: -1)
Length 1968 (nucleotides) / 655 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1609
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF06808 Tripartite ATP-independent periplasmic transporter, DctM component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4666 General function prediction only (R) R TRAP-type uncharacterized transport system, fused permease components

Protein Sequence

MTNNDHLTPVEPPALDKEASSGTRHLTGIYLKITTTLAIFISLYAIYSNALSNTQEFYRNTIFLSGILILGFILFPFSKRFSTAKFNGWDYLFIALTLISYGYFFFNYVDLHVVRKSIPNTMDYAMAILGIIVLFEAARRTTGYFIPSLATFAIIYALFGQYFMGIFGHAGFSVERLLYRLFMTSEGIFGITLSTASTAIVVFILFGSFLSVSGATALFNDLALAMAGRRRGGPAQVAVISSALTGSLSGSAVANVATTGTFTIPLMKNIGLTSRFAGAVEATASTGGMIMPPIMGAAAFIMAGFLGISYTTIVIAAIIPALLYYAALIMAIDIEAKKQGLKGLSKENIPQVKAVLKARGLLLLPLIIVIGTLLMGKTPIYAGFLGILTIIVASWLTPDKTVRMTLTKVADALAEAARGSVQVTIACAAIGVIICVVTMTGIGATLAFNIVSMTDNTLWMILLVVMLVCIVLSMGLPSTALYIVVAVTVSPILIKAGVMPLAAHFFVFWFGALSNITPPVALASYTAASIARADPMQTSWDAVRLALPGFIIPFILVYNPALLMQGDNLSVISIGLMVISALVGIYALSIATANFWIIKTTWFERIAFAAAAILMIKPGLYTDLLGMALILLTGAFHLLRSKKQLVNVGQVSGEN

Flanking regions ( +/- flanking 50bp)

TTCCACCTGAAGCTCAAACGCAAACTAATAATAAATAACAGGAGTGAGTTATGACTAATAATGACCACCTAACTCCGGTAGAGCCACCAGCATTAGATAAAGAAGCTAGCTCAGGCACTCGTCACCTTACCGGTATCTATTTAAAAATCACCACCACGCTGGCGATATTCATTTCGTTGTATGCTATTTACTCTAATGCCTTATCCAACACCCAAGAGTTTTATCGTAATACTATTTTTCTTAGTGGTATTTTGATCCTTGGTTTTATTTTATTTCCATTCTCTAAACGATTTTCTACCGCGAAATTTAATGGCTGGGATTATCTTTTTATCGCTTTAACATTAATCAGCTATGGCTATTTTTTCTTTAACTATGTTGATCTCCATGTGGTAAGAAAAAGTATTCCCAACACAATGGATTATGCGATGGCAATTCTTGGCATTATTGTTCTTTTTGAAGCAGCAAGAAGAACAACGGGCTATTTTATTCCTAGCCTAGCCACATTCGCCATTATCTATGCCCTATTTGGCCAATATTTTATGGGTATTTTTGGTCATGCAGGATTTTCTGTAGAGAGACTGTTATATCGTTTATTTATGACCAGTGAAGGTATTTTTGGTATTACACTCTCTACTGCCTCTACCGCTATCGTGGTATTTATTTTATTCGGTTCGTTTTTAAGTGTTAGTGGTGCCACAGCACTATTTAATGATTTAGCGCTAGCTATGGCCGGCCGTCGCCGTGGGGGGCCTGCTCAAGTTGCCGTCATTTCATCAGCATTAACAGGTTCATTAAGTGGTAGCGCGGTCGCCAACGTAGCCACTACGGGAACCTTTACCATTCCATTAATGAAAAATATTGGCTTAACATCACGTTTTGCGGGTGCCGTTGAAGCTACTGCATCTACGGGTGGAATGATCATGCCACCGATTATGGGTGCGGCTGCTTTTATTATGGCGGGCTTTTTGGGAATTTCTTATACCACGATTGTTATTGCCGCGATTATTCCTGCATTGCTCTATTACGCGGCCTTGATCATGGCAATTGATATTGAAGCGAAAAAACAAGGTTTAAAAGGACTTAGCAAAGAGAATATTCCACAAGTTAAAGCGGTATTAAAAGCACGCGGTTTATTACTATTACCTTTAATTATTGTAATTGGCACGCTATTAATGGGTAAAACCCCTATTTATGCGGGTTTTCTTGGTATCTTAACCATTATTGTTGCCAGCTGGCTAACACCTGATAAAACGGTACGAATGACATTAACTAAAGTGGCTGATGCTTTAGCAGAAGCGGCTCGTGGCTCGGTACAAGTGACTATCGCTTGTGCTGCCATTGGTGTGATTATTTGTGTTGTTACCATGACCGGTATCGGTGCGACCTTAGCATTTAATATTGTCTCTATGACTGACAATACATTATGGATGATCTTACTGGTTGTGATGTTAGTCTGTATTGTATTAAGTATGGGCTTACCATCAACTGCTCTATATATCGTGGTTGCCGTTACAGTGTCACCTATTTTAATTAAAGCCGGTGTGATGCCTTTAGCGGCTCATTTCTTTGTCTTCTGGTTTGGCGCGTTATCCAATATTACTCCTCCGGTCGCCCTAGCAAGCTATACGGCAGCAAGTATTGCGAGAGCCGATCCGATGCAAACTTCATGGGATGCGGTACGTTTAGCACTCCCTGGTTTTATTATTCCTTTTATTTTGGTTTATAACCCTGCATTACTGATGCAAGGTGATAATTTAAGTGTTATCTCTATCGGGTTAATGGTCATTAGTGCATTAGTGGGAATTTATGCACTAAGTATTGCCACTGCGAATTTTTGGATAATCAAAACAACATGGTTTGAACGTATCGCCTTTGCAGCGGCCGCTATTTTAATGATTAAGCCCGGACTATATACCGATTTATTAGGTATGGCGTTGATCTTACTTACTGGCGCTTTCCATCTGTTGCGCTCTAAAAAACAGCTGGTCAATGTAGGGCAAGTATCTGGAGAAAACTAGATGATAAAAAAGATCTCACGCCAAAAAGCGTCGCAACAAATTCTTGATCA