PF06445


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06445, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06445
Description GyrI-like small molecule binding domain

Occurence in the database

PF06445 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1144 FBDBKF_06550 150409 151329 1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S1
1 group_1144 EHELCC_09595 150981 151901 1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S2
2 group_1144 NLDBIP_09975 150981 151901 1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S4
3 group_1144 LHKJJB_07780 65337 66257 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S3
4 group_1144 HKOGLL_07330 65337 66257 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella morganii S5
5 group_1144 F4V73_RS15385 62093 63007 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Morganella psychrotolerans
6 group_419 PMI_RS19730 1237353 1238267 -1 helix-turn-helix domain-containing protein Proteus mirabilis HI4320