PF06144


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF06144, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF06144
Description DNA polymerase III, delta subunit

Occurence in the database

PF06144 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1551 FBDBKF_10045 103026 104069 1 holA DNA polymerase III subunit delta Morganella morganii S1
1 group_1551 EHELCC_04845 294991 296034 1 holA DNA polymerase III subunit delta Morganella morganii S2
2 group_1551 NLDBIP_04845 294787 295830 1 holA DNA polymerase III subunit delta Morganella morganii S4
3 group_1551 LHKJJB_13785 39548 40591 -1 holA DNA polymerase III subunit delta Morganella morganii S3
4 group_1551 HKOGLL_12750 103807 104850 1 holA DNA polymerase III subunit delta Morganella morganii S5
5 group_1551 F4V73_RS00290 67620 68663 -1 holA DNA polymerase III subunit delta Morganella psychrotolerans
6 group_1551 PMI_RS02125 497964 498998 -1 holA DNA polymerase III subunit delta Proteus mirabilis HI4320