PF05708


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05708, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05708
Description Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family

Occurence in the database

PF05708 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2689 FBDBKF_05445 97995 98597 -1 yiiX YiiX family permuted papain-like enzyme Morganella morganii S1
1 group_1842 FBDBKF_13750 42440 43003 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Morganella morganii S1
2 group_1842 EHELCC_11420 127316 127879 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Morganella morganii S2
3 group_2689 EHELCC_12145 82897 83499 1 yiiX YiiX family permuted papain-like enzyme Morganella morganii S2
4 group_1842 NLDBIP_11765 127316 127879 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Morganella morganii S4
5 group_2689 NLDBIP_12485 82852 83454 1 yiiX YiiX family permuted papain-like enzyme Morganella morganii S4
6 group_1842 LHKJJB_11625 127316 127879 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Morganella morganii S3
7 group_2689 LHKJJB_12345 82897 83499 1 yiiX YiiX family permuted papain-like enzyme Morganella morganii S3
8 group_1842 HKOGLL_10235 127316 127879 1 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Morganella morganii S5
9 group_2689 HKOGLL_10960 82897 83499 1 yiiX YiiX family permuted papain-like enzyme Morganella morganii S5
10 group_2689 F4V73_RS03850 816415 817017 1 YiiX family permuted papain-like enzyme Morganella psychrotolerans
11 group_1842 F4V73_RS12620 120278 120841 1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase Morganella psychrotolerans
12 group_1842 PMI_RS07460 1628234 1628734 -1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase Proteus mirabilis HI4320