Homologs in group_2689

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05445 FBDBKF_05445 77.0 Morganella morganii S1 yiiX YiiX family permuted papain-like enzyme
EHELCC_12145 EHELCC_12145 77.0 Morganella morganii S2 yiiX YiiX family permuted papain-like enzyme
NLDBIP_12485 NLDBIP_12485 77.0 Morganella morganii S4 yiiX YiiX family permuted papain-like enzyme
LHKJJB_12345 LHKJJB_12345 77.0 Morganella morganii S3 yiiX YiiX family permuted papain-like enzyme
HKOGLL_10960 HKOGLL_10960 77.0 Morganella morganii S5 yiiX YiiX family permuted papain-like enzyme

Distribution of the homologs in the orthogroup group_2689

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2689

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P32167 1.59e-77 233 59 0 179 3 yiiX Uncharacterized protein YiiX Escherichia coli (strain K12)
P24238 4.88e-15 73 26 2 173 4 yebB Uncharacterized protein YebB Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03850
Feature type CDS
Gene -
Product YiiX family permuted papain-like enzyme
Location 816415 - 817017 (strand: 1)
Length 603 (nucleotides) / 200 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2689
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3863 Function unknown (S) S Uncharacterized conserved protein YycO, NlpC/P60 family

Protein Sequence

MIISVRNLLLLFCFFTAPVFALQPQQGDIIFHTSRSSQSAAIQKATHSPYSHMGIILLRDGKPYVYEAADVVKFTPLKQWVARGVSGHYVLKRLRTPLTGSQKKALYQEALRYQSRPYDLTFSWDDERIYCSELVWKIYKNASGTEIGKLQTLREFDLSSPAVRAKMKERYGNRIPLNETVISPKSMFDSPLLLTVDERR

Flanking regions ( +/- flanking 50bp)

GACAGGCTGTCCGGTGCAGTTTTTTTATGGCATTTCACAGGAGACGACGCATGATAATATCAGTGCGCAACCTGTTATTACTCTTTTGTTTTTTCACCGCCCCCGTATTTGCCCTGCAACCGCAACAGGGCGATATTATTTTCCACACCTCGCGTTCATCCCAAAGTGCCGCCATTCAGAAAGCCACGCATTCGCCCTACAGTCATATGGGTATTATTCTGCTGCGTGACGGGAAACCTTATGTGTATGAAGCGGCAGATGTTGTGAAATTTACGCCGCTGAAACAGTGGGTTGCACGGGGCGTTTCCGGTCATTATGTGCTGAAACGGCTGCGCACACCGCTGACGGGATCGCAGAAAAAGGCACTGTATCAGGAAGCGCTCCGTTATCAGTCGCGGCCTTATGACCTGACATTTTCATGGGATGATGAGCGGATCTACTGCTCTGAGCTGGTCTGGAAGATATACAAAAATGCATCCGGCACAGAGATCGGGAAATTGCAGACATTGCGTGAGTTTGACCTGTCATCACCGGCGGTCAGAGCTAAAATGAAAGAGCGCTACGGTAACCGTATCCCGCTGAATGAAACGGTGATCTCCCCCAAATCAATGTTTGACTCACCGTTATTACTGACGGTGGATGAACGCCGGTAATTTGTTACCGGCTATTCGTCGCTGTAACTGCCGTCAGGCGATTTCAGGAT