PF05065


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF05065, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF05065
Description Phage capsid family

Occurence in the database

PF05065 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3561 FBDBKF_18620 11501 12721 -1 phage major capsid protein Morganella morganii S1
1 group_3100 FBDBKF_19400 10375 11589 -1 phage major capsid protein Morganella morganii S1
2 group_3561 EHELCC_15195 11501 12721 -1 phage major capsid protein Morganella morganii S2
3 group_3100 EHELCC_19260 1814 3028 1 phage major capsid protein Morganella morganii S2
4 group_3561 NLDBIP_15725 11501 12721 -1 phage major capsid protein Morganella morganii S4
5 group_3100 NLDBIP_19390 1814 3028 1 phage major capsid protein Morganella morganii S4
6 group_3561 LHKJJB_16115 103965 105185 1 phage major capsid protein Morganella morganii S3
7 group_3100 LHKJJB_19415 10375 11589 -1 phage major capsid protein Morganella morganii S3
8 group_3561 HKOGLL_15235 103177 104397 1 phage major capsid protein Morganella morganii S5
9 group_3100 HKOGLL_19195 1814 3028 1 phage major capsid protein Morganella morganii S5
10 group_3100 PMI_RS04545 1009116 1010282 1 phage major capsid protein Proteus mirabilis HI4320