Orthogroup:group_3098


Homologs in group_3098

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19305 FBDBKF_19305 Morganella morganii S1 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
EHELCC_07590 EHELCC_07590 Morganella morganii S2 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
NLDBIP_07915 NLDBIP_07915 Morganella morganii S4 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
LHKJJB_07450 LHKJJB_07450 Morganella morganii S3 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
HKOGLL_03480 HKOGLL_03480 Morganella morganii S5 blaDHA-1 extended-spectrum class C beta-lactamase DHA-1
F4V73_RS12065 F4V73_RS12065 Morganella psychrotolerans ampC class C beta-lactamase

Distribution of group_3098 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3098 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3098

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_3098.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 blaDHA-1 5
2 ampC 1

Product

# Product Occurence
1 extended-spectrum class C beta-lactamase DHA-1 5
2 class C beta-lactamase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1680 6 V Defense mechanisms (V) CubicO group peptidase, beta-lactamase class C family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01467 1 beta-lactamase class C [EC:3.5.2.6] beta-Lactam resistance
Two-component system		 -
K19100 5 beta-lactamase class C DHA [EC:3.5.2.6] beta-Lactam resistance -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00144 6 Beta-lactamase

AMR gene Annotation(s)

Gene Occurences Description Scope Type Class Subclass HMM
blaDHA-1 5 extended-spectrum class C beta-lactamase DHA-1 core AMR BETA-LACTAM CEPHALOSPORIN NF012102 
ampC 1 class C beta-lactamase core AMR BETA-LACTAM BETA-LACTAM NF033085 

Annotations of the 56 SwissProt hits

Annotation Number of occurrences
Beta-lactamase 11
Beta-lactamase CMY-1 1
Beta-lactamase CMY-10 1
Beta-lactamase CMY-2 1
Beta-lactamase CMY-4 1
Beta-lactamase-like protein 2 1
D-alanyl-D-alanine carboxypeptidase 1
D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 2
D-aminopeptidase 1
Esterase EstB 1
Penicillin-binding protein 4 1
Penicillin-binding protein 4* 1
Protein Rv1367c 1
Protein flp 8
Putative D-alanyl-D-alanine carboxypeptidase 12
Putative penicillin-binding protein PbpX 1
Serine beta-lactamase-like protein LACTB, mitochondrial 1
Teichoic acid D-alanine hydrolase 8
Uncharacterized protein MT1414 1
Unguisins hydrolase ungD 1

Protein length

Unique protein length 379

Protein length distribution