PF04397


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04397, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04397
Description LytTr DNA-binding domain

Occurence in the database

PF04397 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_307 FBDBKF_08715 124527 125240 -1 btsR two-component system response regulator BtsR Morganella morganii S1
1 group_307 EHELCC_12810 38485 39198 1 btsR two-component system response regulator BtsR Morganella morganii S2
2 group_307 NLDBIP_13150 38485 39198 1 btsR two-component system response regulator BtsR Morganella morganii S4
3 group_307 LHKJJB_13405 123245 123958 -1 btsR two-component system response regulator BtsR Morganella morganii S3
4 group_307 HKOGLL_11625 38485 39198 1 btsR two-component system response regulator BtsR Morganella morganii S5
5 group_307 F4V73_RS09935 93161 93874 -1 btsR two-component system response regulator BtsR Morganella psychrotolerans
6 group_307 PMI_RS17095 3759862 3760578 -1 btsR two-component system response regulator BtsR Proteus mirabilis HI4320