PF04342


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04342, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04342
Description Putative member of DMT superfamily (DUF486)

Occurence in the database

PF04342 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2331 FBDBKF_18245 14387 14731 1 DUF486 domain-containing protein Morganella morganii S1
1 group_2331 EHELCC_18280 14260 14604 1 DUF486 domain-containing protein Morganella morganii S2
2 group_2331 NLDBIP_18205 14461 14805 1 DUF486 domain-containing protein Morganella morganii S4
3 group_2331 LHKJJB_18400 14299 14643 1 DUF486 domain-containing protein Morganella morganii S3
4 group_2331 HKOGLL_18135 14277 14621 1 DUF486 domain-containing protein Morganella morganii S5
5 group_2331 F4V73_RS01775 392485 392829 1 DMT family protein Morganella psychrotolerans
6 group_2331 PMI_RS09560 2086751 2087095 1 DMT family protein Proteus mirabilis HI4320