Orthogroup:group_2364


Homologs in group_2364

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19070 FBDBKF_19070 Morganella morganii S1 - Uncharacterized C-terminal domain of topoisomerase IA
EHELCC_18815 EHELCC_18815 Morganella morganii S2 - Uncharacterized C-terminal domain of topoisomerase IA
NLDBIP_18830 NLDBIP_18830 Morganella morganii S4 - Uncharacterized C-terminal domain of topoisomerase IA
LHKJJB_18685 LHKJJB_18685 Morganella morganii S3 - Uncharacterized C-terminal domain of topoisomerase IA
HKOGLL_18420 HKOGLL_18420 Morganella morganii S5 - Uncharacterized C-terminal domain of topoisomerase IA
F4V73_RS19095 F4V73_RS19095 Morganella psychrotolerans - topoisomerase DNA-binding C4 zinc finger domain-containing protein
PMI_RS16320 PMI_RS16320 Proteus mirabilis HI4320 - type I DNA topoisomerase

Distribution of group_2364 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2364 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2364

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_2364.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 7

Product

# Product Occurence
1 Uncharacterized C-terminal domain of topoisomerase IA 5
2 topoisomerase DNA-binding C4 zinc finger domain-containing protein 1
3 type I DNA topoisomerase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0551 7 L Replication, recombination and repair (L) DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07479 7 putative DNA topoisomerase - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01396 7 Topoisomerase DNA binding C4 zinc finger

Annotations of the 45 SwissProt hits

Annotation Number of occurrences
DNA topoisomerase 1 42
DNA topoisomerase I, plasmid 1
Uncharacterized protein HI_0656.1 1
Uncharacterized protein YrdD 1

Protein length

Min length 172
Max length 185
Mean length (sd) 180.3 (3.9)
Median length 181.0

Protein length distribution