PF04287


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04287, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04287
Description tRNA pseudouridine synthase C

Occurence in the database

PF04287 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1069 FBDBKF_06055 36164 36487 -1 yqcC DUF446 domain-containing protein Morganella morganii S1
1 group_1069 EHELCC_09100 36736 37059 -1 yqcC DUF446 domain-containing protein Morganella morganii S2
2 group_1069 NLDBIP_09480 36736 37059 -1 yqcC DUF446 domain-containing protein Morganella morganii S4
3 group_1069 LHKJJB_08275 180179 180502 1 yqcC DUF446 domain-containing protein Morganella morganii S3
4 group_1069 HKOGLL_07825 180179 180502 1 yqcC DUF446 domain-containing protein Morganella morganii S5
5 group_1069 F4V73_RS15850 177374 177697 1 YqcC family protein Morganella psychrotolerans
6 group_1069 PMI_RS11330 2494580 2494903 -1 YqcC family protein Proteus mirabilis HI4320