Homologs in group_1069

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06055 FBDBKF_06055 83.2 Morganella morganii S1 yqcC DUF446 domain-containing protein
EHELCC_09100 EHELCC_09100 83.2 Morganella morganii S2 yqcC DUF446 domain-containing protein
NLDBIP_09480 NLDBIP_09480 83.2 Morganella morganii S4 yqcC DUF446 domain-containing protein
LHKJJB_08275 LHKJJB_08275 83.2 Morganella morganii S3 yqcC DUF446 domain-containing protein
HKOGLL_07825 HKOGLL_07825 83.2 Morganella morganii S5 yqcC DUF446 domain-containing protein
PMI_RS11330 PMI_RS11330 53.8 Proteus mirabilis HI4320 - YqcC family protein

Distribution of the homologs in the orthogroup group_1069

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1069

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q57152 1.32e-24 92 44 0 101 4 HI_1436 Uncharacterized protein HI_1436 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q46919 4.92e-15 68 40 1 84 1 yqcC Uncharacterized protein YqcC Escherichia coli (strain K12)
Q47417 5.77e-14 69 32 0 96 3 truC tRNA pseudouridine synthase C Pectobacterium carotovorum subsp. carotovorum

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15850
Feature type CDS
Gene -
Product YqcC family protein
Location 177374 - 177697 (strand: 1)
Length 324 (nucleotides) / 107 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1069
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04287 tRNA pseudouridine synthase C

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3098 Function unknown (S) S Uncharacterized conserved protein YqcC, DUF446 family

Protein Sequence

MKKRQQIVDILTGIEEEMRAVDLWQGQPPAADAFESKLPFAVDTMNAHEWLQWILIPRLYAVIEQGSALPSAFQITPYFEEHYRNDADAPRYLTLLNHLRTLDGLFA

Flanking regions ( +/- flanking 50bp)

CTCCGCCTTCCTGAGATGAACTAATTGTGCAGAGTGAGCAGGTTTCAGCTATGAAAAAACGTCAGCAGATTGTTGATATTCTTACCGGTATTGAAGAAGAAATGCGCGCAGTTGATCTGTGGCAGGGGCAGCCGCCGGCGGCGGATGCATTTGAGAGTAAACTGCCGTTTGCTGTGGATACCATGAATGCCCACGAATGGTTGCAGTGGATACTTATCCCGCGCCTGTATGCCGTGATTGAGCAGGGTTCAGCATTACCGTCCGCTTTTCAGATAACCCCGTATTTTGAAGAGCATTACCGCAATGATGCGGATGCGCCTCGCTATCTGACATTATTAAATCATCTGCGGACATTGGACGGGCTTTTCGCGTGACTCAGTTATTAGAAATCTGTTATCAGGATGAATATCTCATCGCAATCAAT