PF04237


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04237, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04237
Description YjbR

Occurence in the database

PF04237 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2450 FBDBKF_20505 2443 2670 -1 MmcQ-like protein Morganella morganii S1
1 group_2450 EHELCC_19790 212 439 1 MmcQ-like protein Morganella morganii S2
2 group_2450 NLDBIP_19835 2443 2670 -1 MmcQ-like protein Morganella morganii S4
3 group_2450 LHKJJB_19790 212 439 1 MmcQ-like protein Morganella morganii S3
4 group_2450 HKOGLL_19675 2443 2670 -1 MmcQ-like protein Morganella morganii S5
5 group_2450 F4V73_RS01625 358545 358904 1 MmcQ/YjbR family DNA-binding protein Morganella psychrotolerans
6 group_2450 PMI_RS04800 1055455 1055811 1 MmcQ/YjbR family DNA-binding protein Proteus mirabilis HI4320