Homologs in group_2450

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20505 FBDBKF_20505 69.3 Morganella morganii S1 - MmcQ-like protein
EHELCC_19790 EHELCC_19790 69.3 Morganella morganii S2 - MmcQ-like protein
NLDBIP_19835 NLDBIP_19835 69.3 Morganella morganii S4 - MmcQ-like protein
LHKJJB_19790 LHKJJB_19790 69.3 Morganella morganii S3 - MmcQ-like protein
HKOGLL_19675 HKOGLL_19675 69.3 Morganella morganii S5 - MmcQ-like protein
PMI_RS04800 PMI_RS04800 58.5 Proteus mirabilis HI4320 - MmcQ/YjbR family DNA-binding protein

Distribution of the homologs in the orthogroup group_2450

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2450

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37507 7.95e-33 114 44 1 118 4 yyaQ Uncharacterized protein YyaQ Bacillus subtilis (strain 168)
P0AF50 3.92e-06 45 38 1 54 1 yjbR Uncharacterized protein YjbR Escherichia coli (strain K12)
P0AF51 3.92e-06 45 38 1 54 4 yjbR Uncharacterized protein YjbR Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01625
Feature type CDS
Gene -
Product MmcQ/YjbR family DNA-binding protein
Location 358545 - 358904 (strand: 1)
Length 360 (nucleotides) / 119 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2450
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04237 YjbR

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2315 Transcription (K) K Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family

Protein Sequence

MKRNDLINYIQNNYGVSPEYPWDKYPNYVVFRHQGSSKWFALIMDVSADKLHEGDSGTIIDIVDVKVEPELVGSLRLKEGIFPAYHMNKEHWITIKLDNNFSESELKSLIDGSYRLTQK

Flanking regions ( +/- flanking 50bp)

CGATAAATGGCGTTAACTGTAATAGTCGATAATTCATTTAAGGTGGCAACATGAAAAGGAATGATCTGATAAATTATATCCAAAATAATTATGGGGTATCTCCTGAGTATCCATGGGATAAATACCCAAATTATGTTGTATTCAGACATCAGGGCAGTTCTAAGTGGTTTGCGCTCATTATGGATGTATCTGCGGATAAATTACATGAGGGTGACTCGGGGACTATCATTGATATCGTAGATGTTAAGGTTGAGCCTGAGCTGGTCGGTTCACTTCGCTTGAAAGAGGGCATTTTCCCTGCGTATCATATGAATAAAGAGCACTGGATTACCATAAAATTGGATAATAATTTTAGTGAATCTGAACTTAAATCATTGATTGATGGTAGTTACAGGTTAACTCAAAAATAGCACGAGCCACCCGCCATTAAATGAGCCAATAAGAAGGCAGGCCGGGATAG