Homologs in group_2450

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20505 FBDBKF_20505 50.7 Morganella morganii S1 - MmcQ-like protein
EHELCC_19790 EHELCC_19790 50.7 Morganella morganii S2 - MmcQ-like protein
NLDBIP_19835 NLDBIP_19835 50.7 Morganella morganii S4 - MmcQ-like protein
LHKJJB_19790 LHKJJB_19790 50.7 Morganella morganii S3 - MmcQ-like protein
HKOGLL_19675 HKOGLL_19675 50.7 Morganella morganii S5 - MmcQ-like protein
F4V73_RS01625 F4V73_RS01625 58.5 Morganella psychrotolerans - MmcQ/YjbR family DNA-binding protein

Distribution of the homologs in the orthogroup group_2450

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2450

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37507 2.15e-28 102 38 1 118 4 yyaQ Uncharacterized protein YyaQ Bacillus subtilis (strain 168)
P0AAT2 9.36e-05 42 25 3 120 4 ybdF Uncharacterized protein YbdF Escherichia coli (strain K12)
P0AAT3 9.36e-05 42 25 3 120 4 ybdF Uncharacterized protein YbdF Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04800
Feature type CDS
Gene -
Product MmcQ/YjbR family DNA-binding protein
Location 1055455 - 1055811 (strand: 1)
Length 357 (nucleotides) / 118 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2450
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04237 YjbR

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2315 Transcription (K) K Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family

Protein Sequence

MNRKELIEYIQKTYAVIPEYLWSKYPNYAVFRHHNHSKWFAVIMDVAENKLFDTGKNNKVDVINLKVPVPLVGALRLKKAVYPAYHMNKEHWISIRLDTDFDDAELKSLISESYELTQ

Flanking regions ( +/- flanking 50bp)

TCATGCGTTTAGTGACCAAGTTATACATCATTTTATGAGATGACCGGACAATGAATAGAAAAGAGCTTATCGAGTATATACAGAAAACATATGCCGTAATCCCCGAATATTTATGGAGTAAGTACCCTAATTATGCGGTTTTCAGACATCATAATCATTCTAAATGGTTCGCCGTCATCATGGATGTCGCTGAAAACAAGCTATTTGATACGGGTAAAAATAATAAAGTCGATGTGATTAACTTAAAAGTACCGGTGCCTTTAGTGGGGGCTCTACGCTTAAAAAAAGCAGTTTATCCCGCTTATCATATGAACAAAGAGCATTGGATTTCTATTCGCTTAGACACAGATTTTGATGATGCTGAGCTAAAATCATTAATTTCTGAAAGTTACGAACTGACGCAGTGAAAGGCTTAATACTAATAATCAATAACAAGGTGAATATAATAAAAACTTAT