PF04093


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04093, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04093
Description rod shape-determining protein MreD

Occurence in the database

PF04093 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_750 FBDBKF_03340 69618 70106 -1 mreD rod shape-determining protein MreD Morganella morganii S1
1 group_750 EHELCC_07195 176997 177485 1 mreD rod shape-determining protein MreD Morganella morganii S2
2 group_750 NLDBIP_07520 176870 177358 1 mreD rod shape-determining protein MreD Morganella morganii S4
3 group_750 LHKJJB_07055 140616 141104 1 mreD rod shape-determining protein MreD Morganella morganii S3
4 group_750 HKOGLL_03875 92283 92771 -1 mreD rod shape-determining protein MreD Morganella morganii S5
5 group_750 F4V73_RS11595 469655 470143 1 mreD rod shape-determining protein MreD Morganella psychrotolerans
6 group_750 PMI_RS18075 3970666 3971154 1 mreD rod shape-determining protein MreD Proteus mirabilis HI4320