Homologs in group_750

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03340 FBDBKF_03340 94.4 Morganella morganii S1 mreD rod shape-determining protein MreD
EHELCC_07195 EHELCC_07195 94.4 Morganella morganii S2 mreD rod shape-determining protein MreD
NLDBIP_07520 NLDBIP_07520 94.4 Morganella morganii S4 mreD rod shape-determining protein MreD
LHKJJB_07055 LHKJJB_07055 94.4 Morganella morganii S3 mreD rod shape-determining protein MreD
HKOGLL_03875 HKOGLL_03875 94.4 Morganella morganii S5 mreD rod shape-determining protein MreD
PMI_RS18075 PMI_RS18075 63.6 Proteus mirabilis HI4320 mreD rod shape-determining protein MreD

Distribution of the homologs in the orthogroup group_750

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_750

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABH4 2.72e-68 207 60 0 162 1 mreD Rod shape-determining protein MreD Escherichia coli (strain K12)
P0ABH5 2.72e-68 207 60 0 162 3 mreD Rod shape-determining protein MreD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABH6 2.72e-68 207 60 0 162 3 mreD Rod shape-determining protein MreD Escherichia coli O157:H7
P44476 3.2e-34 120 45 0 147 3 mreD Rod shape-determining protein MreD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11595
Feature type CDS
Gene mreD
Product rod shape-determining protein MreD
Location 469655 - 470143 (strand: 1)
Length 489 (nucleotides) / 162 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_750
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04093 rod shape-determining protein MreD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2891 Cell wall/membrane/envelope biogenesis (M) M Cell shape-determining protein MreD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03571 rod shape-determining protein MreD - -

Protein Sequence

MNTYRGQNRIIIWISFLIAIVLQIMPWPEQLQFYRPSWAMLFLIYWVMALPHRVSVGSAFFLGMMIDLIEGSTLGVHALSLSIVTYLVAFKHQLLRNMALWQQSLVIMVLSALMQFFVFWSEFLLSNIVFHPEVFWNSLVNGILWPWIFLLLRKTRRHFSVH

Flanking regions ( +/- flanking 50bp)

CCGGATACCGCAGACACCGCACCTGTCCGTCAGCTGAGAATGAAGCCGCAATGAATACCTACCGGGGACAGAACCGGATAATCATCTGGATCTCATTTCTGATAGCGATTGTGCTGCAAATCATGCCGTGGCCGGAACAACTGCAATTTTATCGCCCGTCCTGGGCGATGCTGTTTCTTATCTACTGGGTGATGGCGCTGCCACACCGGGTCAGTGTCGGCTCTGCTTTTTTTCTCGGTATGATGATTGATCTGATTGAAGGCTCCACGCTCGGCGTGCATGCACTGAGCTTATCGATTGTCACTTATCTGGTGGCGTTCAAACATCAGTTACTGCGTAATATGGCACTGTGGCAGCAGTCATTGGTGATTATGGTATTGTCGGCACTGATGCAGTTCTTTGTTTTCTGGTCAGAATTTCTACTGTCAAACATTGTGTTTCATCCGGAAGTCTTCTGGAACAGTCTGGTCAATGGTATCTTATGGCCATGGATCTTTTTATTATTGCGTAAGACGCGCCGTCACTTTTCTGTTCATTAATAAGGGAACGGCGGCGTGATACGTTAACAAAACGTCAGGACGCCTGAATG