PF04076


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04076, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04076
Description Bacterial OB fold (BOF) protein

Occurence in the database

PF04076 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2481 FBDBKF_01015 183994 184407 1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S1
1 group_953 FBDBKF_05200 47440 47853 -1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S1
2 group_2481 EHELCC_00530 124461 124874 -1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S2
3 group_953 EHELCC_12390 133641 134054 1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S2
4 group_2481 NLDBIP_02930 555262 555675 1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S4
5 group_953 NLDBIP_12730 133596 134009 1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S4
6 group_2481 LHKJJB_04445 162503 162916 1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S3
7 group_953 LHKJJB_12590 133641 134054 1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S3
8 group_2481 HKOGLL_02600 124666 125079 -1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S5
9 group_953 HKOGLL_11205 133641 134054 1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family Morganella morganii S5
10 group_953 F4V73_RS05660 1203750 1204166 -1 NirD/YgiW/YdeI family stress tolerance protein Morganella psychrotolerans
11 group_2481 F4V73_RS07090 1472412 1472807 1 NirD/YgiW/YdeI family stress tolerance protein Morganella psychrotolerans
12 group_953 PMI_RS15310 3396170 3396574 -1 YgiW/YdeI family stress tolerance OB fold protein Proteus mirabilis HI4320