Homologs in group_953

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05200 FBDBKF_05200 100.0 Morganella morganii S1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
EHELCC_12390 EHELCC_12390 100.0 Morganella morganii S2 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
NLDBIP_12730 NLDBIP_12730 100.0 Morganella morganii S4 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
HKOGLL_11205 HKOGLL_11205 100.0 Morganella morganii S5 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
F4V73_RS05660 F4V73_RS05660 90.5 Morganella psychrotolerans - NirD/YgiW/YdeI family stress tolerance protein
PMI_RS15310 PMI_RS15310 42.9 Proteus mirabilis HI4320 - YgiW/YdeI family stress tolerance OB fold protein

Distribution of the homologs in the orthogroup group_953

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_953

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADU5 7.21e-36 122 45 2 137 1 ygiW Protein YgiW Escherichia coli (strain K12)
P0ADU6 7.21e-36 122 45 2 137 3 ygiW Protein YgiW Escherichia coli O157:H7
P44293 1e-16 73 33 4 138 1 HI_1709 Uncharacterized protein HI_1709 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9I6H1 5.27e-12 61 34 0 78 3 carO Calcium-regulated OB-fold protein CarO Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P31130 6.11e-08 51 34 1 91 3 ydeI Uncharacterized protein YdeI Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_12590
Feature type CDS
Gene ydeI
Product putative periplasmic protein YdeI with OB-fold, BOF family
Location 133641 - 134054 (strand: 1)
Length 414 (nucleotides) / 137 (amino acids)

Contig

Accession ZDB_369
Length 181491 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_953
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF04076 Bacterial OB fold (BOF) protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3111 Function unknown (S) S Predicted periplasmic protein YdeI with OB-fold, BOF family

Protein Sequence

MKKLPALALLATLLAGSAGSVFAANGGFEGPGATAVTTTTAAQNGGFSGPDARKMTVADALKLSDDAPVVLRGTIVRQLDNKHYEFKDSTGTIRAEISPKRWDGLKVTPQDEIEVEGEIDKEWNKTELDVKAVRKVQ

Flanking regions ( +/- flanking 50bp)

TTTAATAGTGTCCATGAAGCAAAGACGCTTCCTCATAAAGGAGATAAATGATGAAAAAATTACCTGCACTCGCATTACTTGCCACTTTACTGGCAGGATCAGCCGGTTCCGTTTTTGCAGCCAACGGCGGTTTTGAAGGTCCCGGTGCAACAGCCGTGACAACCACCACAGCGGCACAAAACGGCGGTTTCAGCGGCCCTGATGCCCGTAAAATGACCGTTGCGGATGCACTGAAATTATCTGATGATGCACCGGTTGTGCTGCGCGGTACGATTGTCCGCCAGCTGGATAACAAACATTATGAATTTAAAGACAGCACCGGGACTATCCGTGCTGAAATTTCCCCGAAACGCTGGGACGGACTGAAAGTCACGCCGCAGGATGAAATTGAGGTCGAAGGGGAAATCGACAAAGAGTGGAATAAAACCGAACTGGATGTAAAAGCGGTACGCAAAGTACAGTAATTACCACCGCAGATACACCGGATAATCAGGCCATTTTATTGGCCTGATTT