Homologs in group_953

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05200 FBDBKF_05200 90.5 Morganella morganii S1 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
EHELCC_12390 EHELCC_12390 90.5 Morganella morganii S2 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
NLDBIP_12730 NLDBIP_12730 90.5 Morganella morganii S4 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
LHKJJB_12590 LHKJJB_12590 90.5 Morganella morganii S3 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
HKOGLL_11205 HKOGLL_11205 90.5 Morganella morganii S5 ydeI putative periplasmic protein YdeI with OB-fold, BOF family
PMI_RS15310 PMI_RS15310 46.3 Proteus mirabilis HI4320 - YgiW/YdeI family stress tolerance OB fold protein

Distribution of the homologs in the orthogroup group_953

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_953

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADU5 1.97e-37 127 46 2 138 1 ygiW Protein YgiW Escherichia coli (strain K12)
P0ADU6 1.97e-37 127 46 2 138 3 ygiW Protein YgiW Escherichia coli O157:H7
P44293 8.75e-18 76 33 3 139 1 HI_1709 Uncharacterized protein HI_1709 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P31130 7.51e-11 58 33 3 129 3 ydeI Uncharacterized protein YdeI Escherichia coli (strain K12)
Q9I6H1 2.74e-10 57 34 0 78 3 carO Calcium-regulated OB-fold protein CarO Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05660
Feature type CDS
Gene -
Product NirD/YgiW/YdeI family stress tolerance protein
Location 1203750 - 1204166 (strand: -1)
Length 417 (nucleotides) / 138 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_953
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04076 Bacterial OB fold (BOF) protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3111 Function unknown (S) S Predicted periplasmic protein YdeI with OB-fold, BOF family

Protein Sequence

MKKLPALALLATLLAGSAGSAFAAKNGGFEGPGAPSATTATTTQTGGFSGPDARKMTVADALKLSDDANVVLRGKIVSQIDNKHYEFKDSTGTIRVEISPKRWDGLKVTPQDEIEVEGEIDKEWNKTELDVKAVRKVQ

Flanking regions ( +/- flanking 50bp)

TAAATGCATCTCATGAAGCAACAATGCTTCCTTATATCAGGAGATAAATAATGAAGAAATTACCTGCACTCGCATTACTTGCTACATTACTGGCCGGCTCCGCAGGCTCTGCTTTTGCTGCAAAAAACGGTGGGTTTGAAGGTCCGGGCGCACCATCTGCAACCACAGCCACCACAACCCAAACCGGCGGATTCAGCGGTCCTGATGCCCGTAAAATGACGGTTGCCGACGCGCTGAAATTATCCGATGATGCAAATGTTGTGCTGCGCGGAAAAATCGTCAGCCAGATTGATAATAAGCACTACGAATTTAAAGACAGCACCGGCACCATCCGTGTGGAAATTTCCCCGAAACGCTGGGATGGCTTAAAAGTCACTCCGCAGGATGAAATTGAAGTCGAAGGGGAAATCGATAAAGAGTGGAATAAAACCGAACTGGATGTAAAAGCGGTACGCAAAGTGCAGTAATCGCTTAATGTTTAGTTTTGAAAATGCCCCGGAATGGGGCATTTTCATAT