PF03958


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03958, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03958
Description Bacterial type II/III secretion system short domain

Occurence in the database

PF03958 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_318 FBDBKF_09350 101340 102965 -1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S1
1 group_1595 FBDBKF_10405 36933 37994 1 hofQ Type II secretory pathway, component HofQ Morganella morganii S1
2 group_318 EHELCC_10060 43139 44764 1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S2
3 group_1595 EHELCC_14740 36923 37984 1 hofQ Type II secretory pathway, component HofQ Morganella morganii S2
4 group_318 NLDBIP_10405 21410 23035 1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S4
5 group_1595 NLDBIP_14570 36923 37984 1 hofQ Type II secretory pathway, component HofQ Morganella morganii S4
6 group_318 LHKJJB_10950 168493 170118 -1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S3
7 group_1595 LHKJJB_14775 103742 104803 -1 hofQ Type II secretory pathway, component HofQ Morganella morganii S3
8 group_1595 HKOGLL_13395 103742 104803 -1 hofQ Type II secretory pathway, component HofQ Morganella morganii S5
9 group_318 HKOGLL_14010 101794 103419 -1 sctC type III secretion system outer membrane ring subunit SctC Morganella morganii S5
10 group_318 F4V73_RS08365 1732129 1733670 1 sctC type III secretion system outer membrane ring subunit SctC Morganella psychrotolerans
11 group_318 F4V73_RS10615 252229 253896 1 sctC type III secretion system outer membrane ring subunit SctC Morganella psychrotolerans
12 group_1595 F4V73_RS14100 33500 34564 1 transporter Morganella psychrotolerans
13 group_318 PMI_RS13285 2947999 2949714 -1 sctC type III secretion system outer membrane ring subunit SctC Proteus mirabilis HI4320
14 group_1595 PMI_RS14965 3321611 3322726 1 competence protein E Proteus mirabilis HI4320