Homologs in group_1642

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10405 FBDBKF_10405 78.0 Morganella morganii S1 hofQ Type II secretory pathway, component HofQ
EHELCC_14740 EHELCC_14740 78.0 Morganella morganii S2 hofQ Type II secretory pathway, component HofQ
NLDBIP_14570 NLDBIP_14570 78.0 Morganella morganii S4 hofQ Type II secretory pathway, component HofQ
LHKJJB_14775 LHKJJB_14775 78.0 Morganella morganii S3 hofQ Type II secretory pathway, component HofQ
HKOGLL_13395 HKOGLL_13395 78.0 Morganella morganii S5 hofQ Type II secretory pathway, component HofQ
PMI_RS14965 PMI_RS14965 49.7 Proteus mirabilis HI4320 - competence protein E

Distribution of the homologs in the orthogroup group_1642

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1642

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P34749 8.2e-78 247 47 4 297 3 hofQ DNA utilization protein HofQ Escherichia coli (strain K12)
P31772 5.89e-63 210 37 3 307 3 comE Competence protein E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5FAD2 6.62e-37 144 30 6 309 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Q9JVW4 4.66e-36 142 29 6 309 1 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q70M91 6.64e-36 141 29 6 309 1 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9ZHF3 6.76e-36 141 29 6 309 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria meningitidis serogroup B / serotype 15 (strain H44/76)
P34750 4.12e-31 127 26 7 324 1 pilQ Fimbrial assembly protein PilQ Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P03668 3.26e-30 122 28 5 300 3 None Putative assembly protein ORF430 Pseudomonas phage Pf3
P35819 3.92e-23 104 26 5 293 3 pilQ Type IV pilus biogenesis and competence protein PilQ Neisseria gonorrhoeae
P31780 6.62e-20 94 24 6 333 1 exeD Secretin ExeD Aeromonas hydrophila
P45758 2.66e-16 83 24 6 352 1 gspD Putative secretin GspD Escherichia coli (strain K12)
P45778 5.84e-16 82 25 9 336 3 exeD Secretin ExeD Aeromonas salmonicida
P15420 1.17e-15 81 23 11 331 3 IV Virion export protein Enterobacteria phage I2-2
P35818 1.94e-15 80 25 8 336 1 xcpQ Secretin XcpQ Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q01565 6.86e-15 79 27 7 279 1 outD Secretin OutD Dickeya dadantii (strain 3937)
E3PJ86 7.72e-15 79 22 10 354 1 gspD2 Secretin GspD 2 Escherichia coli O78:H11 (strain H10407 / ETEC)
O80300 1.73e-14 77 23 5 260 3 IV Virion export protein Escherichia phage If1
P15644 2.04e-14 77 23 6 327 1 pulD Secretin PulD Klebsiella pneumoniae
P29041 7.75e-14 76 23 7 294 1 xpsD Secretin XpsD Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P03667 2.2e-13 74 21 8 302 3 IV Virion export protein Salmonella phage IKe
P55702 2.82e-13 73 24 7 261 3 NGR_a00790 Uncharacterized protein y4xJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P03664 4.15e-13 73 24 9 301 3 IV Virion export protein Enterobacteria phage fd
Q52498 4.44e-13 73 23 6 289 3 sctC Type 3 secretion system secretin Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
P03666 4.54e-13 73 24 9 301 1 IV Virion export protein Enterobacteria phage f1
P03665 8.78e-13 72 25 10 301 3 IV Virion export protein Enterobacteria phage M13
P31700 1.08e-12 72 26 8 284 3 outD Secretin OutD Dickeya chrysanthemi
P45779 1.78e-12 72 24 9 353 1 epsD Secretin GspD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P31701 4.67e-12 70 23 8 327 3 outD Secretin OutD Pectobacterium carotovorum subsp. carotovorum
Q01723 1.78e-11 68 26 6 233 3 sctC Type 3 secretion system secretin Pseudomonas syringae pv. syringae
P35672 2.16e-11 68 22 7 308 1 sctC1 SPI-1 type 3 secretion system secretin Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q01244 2.73e-11 68 24 8 273 1 sctC Type 3 secretion system secretin Yersinia enterocolitica
P80151 3.42e-11 68 23 6 283 3 sctC Type 3 secretion system secretin Xanthomonas euvesicatoria
Q55293 3.56e-11 67 21 6 296 3 sctC Type 3 secretion system secretin Shigella sonnei
Q04641 4.34e-11 67 21 6 296 1 sctC Type 3 secretion system secretin Shigella flexneri
Q56974 1.2e-10 66 23 8 273 1 sctC Type 3 secretion system secretin Yersinia pestis
D0ZWR9 1.81e-10 65 25 10 252 2 sctC2 SPI-2 type 3 secretion system secretin Salmonella typhimurium (strain 14028s / SGSC 2262)
Q9RW95 1.63e-05 50 23 9 273 1 DR_0774 Probable type IV piliation system protein DR_0774 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14100
Feature type CDS
Gene -
Product transporter
Location 33500 - 34564 (strand: 1)
Length 1065 (nucleotides) / 354 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000004
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1642
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00263 Bacterial type II and III secretion system protein
PF03958 Bacterial type II/III secretion system short domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4796 Intracellular trafficking, secretion, and vesicular transport (U) U Type II secretory pathway, component HofQ

Protein Sequence

MTTKRQGWLAGLIIGGYVLTGAAAHSEMHPRDLFLPAEISAQQAAVMIPPVLSVVAADTAENRQSRTFTLQHADAASVLETLRHHHGALFSEGDVLQADPLTNSLFIDAGAQILTRTEAWLTLMDKPQQQVQITAHIVSGSREALHELGLQWGTVLPSPDKGNRLQLHQARGNNTFTFNIARISGHLLEMELTALEQEQQLDIVASPRLTTAHEHPASIKQGSEIPYTTQSHESGSQVQFREAVLGMEVTPQILRENKVRLTLHISRNAPGVALVQNGSEQYAIDKQEITTQVVVRNGETLILGGIFQQDRGKQVTGVPYLSAIPLMGKLFTHQYDKLSRRELVIFITPQLIDI

Flanking regions ( +/- flanking 50bp)

GAGCCGGTCAGTATCTGAGACTGATTTACCGGATATTAATAAGGAAGAGCATGACAACTAAAAGACAGGGATGGTTAGCCGGGCTGATTATAGGAGGCTATGTCCTGACGGGGGCCGCGGCACACAGTGAGATGCACCCGAGAGATCTCTTTCTGCCGGCGGAGATAAGCGCACAACAGGCTGCGGTGATGATCCCGCCGGTTTTATCTGTGGTCGCGGCGGATACAGCGGAGAACAGGCAGAGCCGCACATTCACATTGCAGCACGCCGATGCGGCTTCGGTTTTGGAAACGCTCCGCCATCATCATGGCGCGCTGTTTAGTGAGGGCGATGTATTGCAGGCTGATCCGCTGACGAATTCCCTCTTTATAGATGCGGGGGCGCAGATACTGACGCGTACAGAAGCCTGGCTGACACTGATGGATAAACCACAGCAGCAGGTACAGATAACCGCACACATTGTGTCCGGCTCCCGCGAGGCGTTGCATGAACTGGGACTGCAATGGGGGACGGTGCTGCCATCGCCGGATAAAGGAAACCGGCTGCAATTACATCAGGCGCGGGGCAATAACACCTTTACCTTTAATATTGCCCGTATCAGCGGACATTTGCTGGAGATGGAGCTCACCGCACTGGAGCAGGAGCAGCAACTGGATATCGTCGCCAGCCCGCGACTGACCACGGCGCATGAACACCCTGCCAGCATTAAACAGGGCTCGGAAATTCCGTATACCACACAGAGCCATGAGTCCGGCTCACAGGTTCAGTTTCGTGAAGCGGTGCTGGGAATGGAGGTCACGCCGCAAATTTTACGGGAAAACAAAGTCCGTCTGACGTTGCATATCAGCCGCAATGCCCCCGGAGTTGCACTGGTGCAGAACGGCAGTGAGCAATACGCAATTGATAAACAGGAAATTACAACGCAGGTGGTTGTACGTAACGGAGAGACACTGATCCTCGGCGGAATTTTTCAGCAGGACAGGGGAAAGCAAGTCACCGGAGTACCGTATTTGTCTGCAATCCCACTGATGGGAAAGCTTTTTACTCACCAATACGATAAACTCAGCCGCCGTGAATTGGTGATTTTCATTACACCACAACTGATTGATATTTAGTAACTGCAAAAATATCAGTCTGTTATATAATTATTTGCGGGAATTATCCG