PF03887


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03887, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03887
Description YfbU domain

Occurence in the database

PF03887 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1903 FBDBKF_14195 36553 37047 -1 yfbU YfbU family protein Morganella morganii S1
1 group_1903 EHELCC_08085 79938 80432 1 yfbU YfbU family protein Morganella morganii S2
2 group_1903 NLDBIP_08410 79938 80432 1 yfbU YfbU family protein Morganella morganii S4
3 group_1903 LHKJJB_05855 176727 177221 -1 yfbU YfbU family protein Morganella morganii S3
4 group_1903 HKOGLL_05060 64529 65023 1 yfbU YfbU family protein Morganella morganii S5
5 group_1903 F4V73_RS02735 576785 577279 1 YfbU family protein Morganella psychrotolerans
6 group_1903 PMI_RS08675 1895831 1896325 -1 YfbU family protein Proteus mirabilis HI4320