PF03840


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03840, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03840
Description Preprotein translocase SecG subunit

Occurence in the database

PF03840 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1401 FBDBKF_08645 111578 111916 1 secG preprotein translocase subunit SecG Morganella morganii S1
1 group_1401 EHELCC_12880 51809 52147 -1 secG preprotein translocase subunit SecG Morganella morganii S2
2 group_1401 NLDBIP_13220 51809 52147 -1 secG preprotein translocase subunit SecG Morganella morganii S4
3 group_1401 LHKJJB_13335 110296 110634 1 secG preprotein translocase subunit SecG Morganella morganii S3
4 group_1401 HKOGLL_11695 51809 52147 -1 secG preprotein translocase subunit SecG Morganella morganii S5
5 group_1401 F4V73_RS09870 78726 79070 1 secG preprotein translocase subunit SecG Morganella psychrotolerans
6 group_1401 PMI_RS17000 3741871 3742215 1 secG preprotein translocase subunit SecG Proteus mirabilis HI4320