PF03837


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03837, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03837
Description RecT family

Occurence in the database

PF03837 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1661 FBDBKF_11190 59031 59768 -1 bet phage recombination protein Bet Morganella morganii S1
1 group_3067 FBDBKF_18545 29936 30988 1 Enterohemolysin Morganella morganii S1
2 group_3067 EHELCC_01840 356853 357905 -1 Enterohemolysin Morganella morganii S2
3 group_1661 EHELCC_18025 40947 41402 1 Phage recombination protein Bet Morganella morganii S2
4 group_3067 NLDBIP_01620 322231 323283 1 Enterohemolysin Morganella morganii S4
5 group_1661 NLDBIP_05355 40773 41510 1 bet phage recombination protein Bet Morganella morganii S4
6 group_3067 LHKJJB_00415 69402 70454 -1 Enterohemolysin Morganella morganii S3
7 group_1661 LHKJJB_02235 18297 19034 1 bet phage recombination protein Bet Morganella morganii S3
8 group_3067 HKOGLL_00455 74913 75965 -1 Enterohemolysin Morganella morganii S5
9 group_1661 HKOGLL_15615 41737 42474 1 bet phage recombination protein Bet Morganella morganii S5
10 group_3067 F4V73_RS06305 1314325 1315188 1 RecT family recombinase Morganella psychrotolerans
11 group_4321 PMI_RS02325 531420 532226 -1 recT recombination protein RecT Proteus mirabilis HI4320
12 group_1661 PMI_RS12100 2675777 2676595 -1 bet phage recombination protein Bet Proteus mirabilis HI4320