PF03824


Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF03824
Protein list: lists the 9 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF03824
Description High-affinity nickel-transport protein

Occurence in the database

PF03824 is associated with 9 different proteins
The 9 proteins are classified into 2 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1627 FBDBKF_10255 3976 4962 1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA Morganella morganii S1
1 group_3759 FBDBKF_12530 21500 22378 -1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA Morganella morganii S1
2 group_1627 EHELCC_14590 3966 4952 1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA Morganella morganii S2
3 group_1627 NLDBIP_14420 3966 4952 1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA Morganella morganii S4
4 group_1627 LHKJJB_14925 136774 137760 -1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA Morganella morganii S3
5 group_1627 HKOGLL_13545 136774 137760 -1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA Morganella morganii S5
6 group_3759 F4V73_RS07760 1620636 1621484 -1 nickel/cobalt efflux protein RcnA Morganella psychrotolerans
7 group_1627 F4V73_RS13970 4247 5260 1 nickel/cobalt transporter Morganella psychrotolerans
8 group_1627 PMI_RS07360 1611328 1612329 -1 nickel/cobalt transporter Proteus mirabilis HI4320