Homologs in group_1579

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10255 FBDBKF_10255 66.5 Morganella morganii S1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
EHELCC_14590 EHELCC_14590 66.5 Morganella morganii S2 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
NLDBIP_14420 NLDBIP_14420 66.5 Morganella morganii S4 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
LHKJJB_14925 LHKJJB_14925 66.5 Morganella morganii S3 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
HKOGLL_13545 HKOGLL_13545 66.5 Morganella morganii S5 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
PMI_RS07360 PMI_RS07360 41.9 Proteus mirabilis HI4320 - nickel/cobalt transporter

Distribution of the homologs in the orthogroup group_1579

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1579

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44136 3.83e-48 167 36 10 307 3 HI_1248 Putative nickel/cobalt efflux system HI_1248 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13970
Feature type CDS
Gene -
Product nickel/cobalt transporter
Location 4247 - 5260 (strand: 1)
Length 1014 (nucleotides) / 337 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1579
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03824 High-affinity nickel-transport protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2215 Inorganic ion transport and metabolism (P) P ABC-type nickel/cobalt efflux system, permease component RcnA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08970 nickel/cobalt transporter (NicO) family protein - -

Protein Sequence

MPLIKTPTIKHGHIALWILFLLIILPGSYLLYSAWPSLLHISTGLQRELNTELATLIGLATLDPLRAGGLLVLFGFLYGLLHALGPGHGKVILSAYIATHPAKLRHSALLSFLASLLQGTVAVTLVSVVLFILQLSTRQLNHISQLTEKMSYVFIIALGGFIIIRALRRLAISTPAKLSAIKKVTPLPLKSSAVLQPAQVHRGGQIPACGCGHQHVVADDALTGHWRTQAGMILAMGCRPCSGALLVLLFSAVIGVFHWGVIATFAMALGTGITLCAIAWFVHSMRFLALRLTHTQGRGMNLRYGEYLRLIAGGIFIIAGILMYQTVSTPGAGFFTG

Flanking regions ( +/- flanking 50bp)

GATGATGATCTTACACTGGGTCGTCAGTTTGCACAGCGGGTCACATTGCAATGCCATTAATAAAGACACCGACAATAAAGCACGGTCATATTGCGCTATGGATTCTGTTCCTGCTCATTATTTTACCGGGAAGCTACTTGCTGTATAGCGCATGGCCATCTTTACTGCATATCAGTACCGGATTACAAAGAGAGCTGAATACTGAGCTGGCAACGCTTATCGGACTGGCAACACTCGATCCGCTGCGGGCGGGGGGCTTATTGGTATTATTCGGTTTTCTGTATGGTCTGCTGCATGCGCTGGGGCCGGGTCACGGTAAAGTGATACTGTCTGCTTATATCGCCACACACCCGGCTAAATTACGCCACAGCGCATTACTCAGTTTTCTCGCCTCCCTGCTTCAGGGAACTGTCGCGGTCACATTAGTTTCGGTTGTATTATTTATATTGCAACTTTCAACACGACAGCTGAATCATATCAGTCAGTTAACTGAAAAAATGAGCTATGTATTTATCATCGCACTGGGCGGATTTATTATTATCCGCGCGCTCCGCCGGTTGGCGATATCTACACCTGCTAAACTATCCGCCATCAAAAAAGTCACACCGCTGCCACTAAAATCATCAGCTGTTTTACAACCGGCGCAGGTTCACCGGGGTGGTCAGATACCGGCTTGTGGTTGCGGGCATCAGCATGTTGTGGCTGACGATGCATTAACCGGACACTGGCGGACACAGGCAGGAATGATCCTTGCGATGGGTTGCCGCCCTTGTTCAGGTGCATTGCTGGTCTTACTATTCTCTGCGGTTATTGGTGTTTTTCATTGGGGCGTTATAGCCACATTTGCCATGGCGCTGGGAACCGGGATCACACTGTGCGCTATTGCCTGGTTTGTTCACAGCATGCGTTTTCTGGCACTGCGCCTGACACATACTCAGGGAAGAGGTATGAATTTGCGCTACGGCGAATATTTACGCCTGATTGCAGGGGGAATATTTATTATTGCCGGAATATTGATGTATCAGACAGTCAGTACACCGGGCGCGGGGTTTTTTACCGGCTGATTTATAAATAATAGAAATAGAATAGGGTGTTTTTGCTATGAATATCGGGG