Homologs in group_3745
1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.
| Locus tag | Identity | Source | Gene | Product | |
|---|---|---|---|---|---|
| FBDBKF_12530 | FBDBKF_12530 | 88.9 | Morganella morganii S1 | rcnA | ABC-type nickel/cobalt efflux system, permease component RcnA |
Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).
| Swissprot accession | Eval | Score | ID (%) | N gaps | Alignment length | Annot score | Gene | Description | Organism |
|---|---|---|---|---|---|---|---|---|---|
| Q8X3U5 | 5.54e-130 | 373 | 69 | 1 | 281 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Escherichia coli O157:H7 |
| Q0T333 | 1.02e-127 | 367 | 68 | 0 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Shigella flexneri serotype 5b (strain 8401) |
| Q1R9W6 | 2.21e-127 | 366 | 68 | 1 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Escherichia coli (strain UTI89 / UPEC) |
| Q8FFX9 | 2.21e-127 | 366 | 68 | 1 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| A1ACX1 | 2.21e-127 | 366 | 68 | 1 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Escherichia coli O1:K1 / APEC |
| P76425 | 5.36e-127 | 365 | 67 | 1 | 280 | 1 | rcnA | Nickel/cobalt efflux system RcnA | Escherichia coli (strain K12) |
| Q0TFY6 | 1.12e-126 | 364 | 67 | 1 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Escherichia coli O6:K15:H31 (strain 536 / UPEC) |
| Q3Z0A4 | 1.31e-126 | 364 | 67 | 1 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Shigella sonnei (strain Ss046) |
| Q32E98 | 1.99e-126 | 364 | 66 | 1 | 283 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Shigella dysenteriae serotype 1 (strain Sd197) |
| A8A1X1 | 2.06e-126 | 363 | 67 | 1 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Escherichia coli O9:H4 (strain HS) |
| A9N3J5 | 3.02e-123 | 356 | 65 | 1 | 286 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) |
| Q8ZM94 | 3.26e-123 | 356 | 67 | 2 | 286 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) |
| Q5PEQ4 | 6.98e-123 | 354 | 65 | 1 | 280 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Salmonella paratyphi A (strain ATCC 9150 / SARB42) |
| A8AP76 | 1.9e-121 | 351 | 66 | 2 | 288 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) |
| A9MRK2 | 3.34e-118 | 343 | 65 | 1 | 281 | 3 | rcnA | Nickel/cobalt efflux system RcnA | Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) |
| Q58492 | 4.23e-19 | 86 | 25 | 4 | 236 | 3 | MJ1092 | Putative nickel/cobalt efflux system MJ1092 | Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) |
| Q8IFN0 | 0.000544 | 45 | 36 | 1 | 52 | 1 | PFD1115c | Uncharacterized protein PFD1115c | Plasmodium falciparum (isolate 3D7) |
| Q8IFN0 | 0.000544 | 45 | 33 | 2 | 57 | 1 | PFD1115c | Uncharacterized protein PFD1115c | Plasmodium falciparum (isolate 3D7) |
| Source | Morganella psychrotolerans |
|---|---|
| Locus tag | F4V73_RS07760 |
| Feature type | CDS |
| Gene | - |
| Product | nickel/cobalt efflux protein RcnA |
| Location | 1620636 - 1621484 (strand: -1) |
| Length | 849 (nucleotides) / 282 (amino acids) |
| Accession | term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object |
|---|---|
| Length | 2012992 nucleotides |
| Topology | linear |
| Plasmid | False |
| Orthogroup | group_3745 | |
|---|---|---|
| Orthogroup size | 2 | |
| N. genomes | 2 |
| PF03824 | High-affinity nickel-transport protein |
|---|
| ID | Function(s) descr. | Function(s) cat. | Description |
|---|---|---|---|
| COG2215 | Inorganic ion transport and metabolism (P) | P | ABC-type nickel/cobalt efflux system, permease component RcnA |
| KO | Description | Pathways | Modules |
|---|---|---|---|
| K08970 | nickel/cobalt transporter (NicO) family protein | - | - |
MTDFASLLQQGNAWFFIPGAIALGALHGLEPGHSKTMMAAFIIAVKGTVRQAVLLGLAATLSHTLIVWLIALGGMYISKRFTAEAVEPWLQMVSAAVILATAFWMFMRTYRGEKGWLAQMQGDSHHHHDGTHDAHHDHAHHDHHHDHHHDHHHDSEYLDAHAKAHADEIKHRFSDGRATNSQVLLFGLTGGLIPCPAAITVLLICLQLKAFTLGATMVLSFSIGLALTLVTVGVVTAIGVRQVNRRWQGLGEAAKKAPYFSAALIAIVGLYMGIHGYMGLAG
AGTATACTGCGTTCACTCTTTTTTCTTTCTGAAAATACAGGCGCACAGGTATGACGGATTTTGCTTCTTTATTACAGCAGGGTAATGCGTGGTTTTTTATCCCCGGTGCGATTGCGCTCGGTGCATTACACGGGCTGGAGCCGGGACATTCAAAAACCATGATGGCGGCATTTATAATTGCTGTAAAAGGCACTGTCAGGCAGGCGGTATTGCTGGGGCTGGCAGCGACATTGTCACACACGTTGATTGTCTGGCTTATTGCTCTCGGGGGCATGTATATAAGTAAGCGTTTTACCGCCGAAGCGGTGGAGCCCTGGTTACAGATGGTTTCCGCTGCCGTTATTTTAGCCACCGCGTTCTGGATGTTTATGCGGACTTACCGCGGTGAAAAAGGCTGGCTGGCGCAAATGCAGGGGGATAGTCATCACCATCATGATGGTACACATGATGCGCATCACGACCATGCTCATCACGACCATCATCACGACCATCATCACGACCATCATCATGACAGTGAATATCTTGATGCACATGCCAAAGCACATGCGGATGAAATCAAACATCGTTTTTCGGATGGTCGCGCGACAAACAGCCAGGTTTTACTGTTTGGTCTGACCGGCGGGCTGATCCCGTGTCCGGCGGCAATAACGGTGCTGCTTATTTGTCTGCAACTGAAAGCGTTTACCCTGGGGGCGACGATGGTGCTCAGTTTCAGTATCGGGCTTGCGCTGACATTAGTCACGGTAGGGGTTGTGACGGCAATTGGTGTCAGGCAGGTTAACCGCCGCTGGCAGGGATTGGGTGAGGCGGCAAAAAAAGCACCGTATTTTTCAGCAGCACTTATCGCAATTGTCGGGCTGTATATGGGGATCCACGGCTATATGGGGCTGGCAGGGTGATGAATGATATTCCCGCCGTCTCCGGGAATATTTCCCCTTTTTTATTAAAT
