Homologs in group_1627

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10255 FBDBKF_10255 100.0 Morganella morganii S1 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
EHELCC_14590 EHELCC_14590 100.0 Morganella morganii S2 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
LHKJJB_14925 LHKJJB_14925 100.0 Morganella morganii S3 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
HKOGLL_13545 HKOGLL_13545 100.0 Morganella morganii S5 rcnA ABC-type nickel/cobalt efflux system, permease component RcnA
F4V73_RS13970 F4V73_RS13970 66.5 Morganella psychrotolerans - nickel/cobalt transporter
PMI_RS07360 PMI_RS07360 43.0 Proteus mirabilis HI4320 - nickel/cobalt transporter

Distribution of the homologs in the orthogroup group_1627

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1627

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44136 1.19e-47 166 36 5 296 3 HI_1248 Putative nickel/cobalt efflux system HI_1248 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_14420
Feature type CDS
Gene rcnA
Product ABC-type nickel/cobalt efflux system, permease component RcnA
Location 3966 - 4952 (strand: 1)
Length 987 (nucleotides) / 328 (amino acids)
In genomic island -

Contig

Accession ZDB_530
Length 141725 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1627
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03824 High-affinity nickel-transport protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2215 Inorganic ion transport and metabolism (P) P ABC-type nickel/cobalt efflux system, permease component RcnA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08970 nickel/cobalt transporter (NicO) family protein - -

Protein Sequence

MTSYSRIILQLTVVLIVLSAGGLLYSQWPSLLYVSAKLQKELNVEMAVLIQKVVSDPLKAGGLLTLFSFLYGLLHALGPGHGKVILSAYIATHPAKLRHSALLSILASLLQGTVAVILVSVVLFILNLSVRQLNNVSQITEKASYAFIILFGAIIVIRALRRLFIRPPVNKPQIKTIRVSDNKPPVALKPVYLQSGQVQTCSCGHQHVMPGNTVTGNWRTQAGMILAMGSRPCSGALLVLLFSSVIGVFHWGIIAVFAMALGTGITLCMIAWFVHSMRFLALRLSRNPGQKTNRHYGDILRLISGGIFIIAGLLMYQGTGISAGGFFV

Flanking regions ( +/- flanking 50bp)

CGCCAGTTTGCACAGCAGATCACCTTACATTGCCCGGAGTGAGATAACGGATGACATCATATTCACGGATTATTCTTCAGCTCACTGTTGTACTTATTGTTTTGTCTGCGGGCGGGTTGCTGTATAGCCAGTGGCCGTCATTGCTGTATGTCAGTGCAAAATTACAAAAAGAACTGAATGTTGAAATGGCGGTGCTGATTCAGAAAGTAGTGTCTGATCCGCTGAAAGCGGGCGGGCTTCTGACGCTTTTCAGTTTTTTATACGGCTTATTGCACGCACTGGGTCCCGGCCACGGTAAAGTTATCCTTTCTGCTTACATCGCCACACATCCGGCAAAATTACGCCACAGCGCGTTATTAAGTATTCTGGCTTCTCTGCTTCAGGGCACTGTGGCGGTTATTTTAGTCTCTGTTGTACTGTTTATATTAAATTTGTCAGTACGCCAGTTAAATAATGTCAGCCAGATAACGGAGAAAGCCAGTTATGCGTTTATTATTCTTTTTGGCGCCATTATTGTTATCCGCGCATTACGCCGTTTATTTATCAGACCACCGGTCAATAAACCGCAAATAAAAACAATCCGCGTATCGGATAATAAACCCCCTGTTGCGTTAAAACCTGTTTATCTGCAAAGCGGACAAGTTCAGACATGCAGTTGTGGTCATCAGCATGTTATGCCGGGAAATACAGTCACCGGCAATTGGCGGACACAAGCCGGTATGATTCTGGCCATGGGCAGCCGACCGTGTTCGGGGGCATTATTAGTTTTACTATTCTCATCAGTTATCGGTGTTTTTCACTGGGGAATTATCGCGGTATTTGCAATGGCGCTGGGAACCGGTATCACACTGTGTATGATAGCCTGGTTCGTACACAGCATGCGCTTTCTGGCACTGCGCCTGTCCCGTAATCCCGGACAAAAAACAAACCGGCATTATGGCGATATTCTCCGGCTGATATCCGGGGGGATATTTATTATTGCAGGGCTGCTGATGTATCAGGGAACCGGGATATCAGCAGGGGGATTTTTTGTCTGAAAATAAAAAGACACCGGACTCAGCCGGTGTCTTATATTCACCGCTATTTA