PF03772


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03772, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03772
Description Competence protein

Occurence in the database

PF03772 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1231 FBDBKF_07170 106623 108923 1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S1
1 group_1231 EHELCC_03800 77263 79563 -1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S2
2 group_1231 NLDBIP_03800 77059 79359 -1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S4
3 group_1231 LHKJJB_09630 77173 79473 -1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S3
4 group_1231 HKOGLL_09345 111579 113879 1 comEC DNA internalization-related competence protein ComEC/Rec2 Morganella morganii S5
5 group_1231 F4V73_RS01355 294766 297093 1 DNA internalization-related competence protein ComEC/Rec2 Morganella psychrotolerans
6 group_1231 PMI_RS03525 786165 788534 1 DNA internalization-related competence protein ComEC/Rec2 Proteus mirabilis HI4320