PF03740


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03740, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03740
Description Pyridoxal phosphate biosynthesis protein PdxJ

Occurence in the database

PF03740 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_556 FBDBKF_01400 273651 274382 -1 pdxJ pyridoxine 5'-phosphate synthase Morganella morganii S1
1 group_556 EHELCC_00145 34486 35217 1 pdxJ pyridoxine 5'-phosphate synthase Morganella morganii S2
2 group_556 NLDBIP_03315 644919 645650 -1 pdxJ pyridoxine 5'-phosphate synthase Morganella morganii S4
3 group_556 LHKJJB_04830 252160 252891 -1 pdxJ pyridoxine 5'-phosphate synthase Morganella morganii S3
4 group_556 HKOGLL_02215 34691 35422 1 pdxJ pyridoxine 5'-phosphate synthase Morganella morganii S5
5 group_556 F4V73_RS01995 434149 434880 1 pdxJ pyridoxine 5'-phosphate synthase Morganella psychrotolerans
6 group_556 PMI_RS09305 2032019 2032750 -1 pdxJ pyridoxine 5'-phosphate synthase Proteus mirabilis HI4320