PF03600


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03600, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03600
Description Citrate transporter

Occurence in the database

PF03600 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_620 FBDBKF_01975 81590 82903 -1 citM Mg2+/citrate symporter Morganella morganii S1
1 group_1869 FBDBKF_13965 86530 87915 -1 citT Di- and tricarboxylate antiporter Morganella morganii S1
2 group_1902 FBDBKF_14185 33908 35737 -1 citT Di- and tricarboxylate antiporter Morganella morganii S1
3 group_620 EHELCC_02445 469410 470723 -1 citM Mg2+/citrate symporter Morganella morganii S2
4 group_1902 EHELCC_08095 81248 83077 1 citT Di- and tricarboxylate antiporter Morganella morganii S2
5 group_1869 EHELCC_11635 171406 172791 -1 citT Di- and tricarboxylate antiporter Morganella morganii S2
6 group_620 NLDBIP_01015 209413 210726 1 citM Mg2+/citrate symporter Morganella morganii S4
7 group_1902 NLDBIP_08420 81248 83077 1 citT Di- and tricarboxylate antiporter Morganella morganii S4
8 group_1869 NLDBIP_11980 171406 172791 -1 citT Di- and tricarboxylate antiporter Morganella morganii S4
9 group_620 LHKJJB_01020 181959 183272 -1 citM Mg2+/citrate symporter Morganella morganii S3
10 group_1902 LHKJJB_05845 174082 175911 -1 citT Di- and tricarboxylate antiporter Morganella morganii S3
11 group_1869 LHKJJB_11840 171406 172791 -1 citT Di- and tricarboxylate antiporter Morganella morganii S3
12 group_620 HKOGLL_01060 187470 188783 -1 citM Mg2+/citrate symporter Morganella morganii S5
13 group_1902 HKOGLL_05070 65839 67668 1 citT Di- and tricarboxylate antiporter Morganella morganii S5
14 group_1869 HKOGLL_10450 171406 172791 -1 citT Di- and tricarboxylate antiporter Morganella morganii S5
15 group_1902 F4V73_RS02745 578109 579938 1 SLC13 family permease Morganella psychrotolerans
16 group_620 F4V73_RS04320 912035 913348 -1 citrate:proton symporter Morganella psychrotolerans
17 group_1869 F4V73_RS12820 163823 165208 -1 DASS family sodium-coupled anion symporter Morganella psychrotolerans
18 group_1902 PMI_RS08665 1893195 1895024 -1 SLC13 family permease Proteus mirabilis HI4320
19 group_620 PMI_RS11935 2638876 2640189 -1 citrate:proton symporter Proteus mirabilis HI4320