Orthogroup:group_1940



Homologs in group_1940

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14560 FBDBKF_14560 Morganella morganii S1 mnmA tRNA 2-thiouridine(34) synthase MnmA
EHELCC_15365 EHELCC_15365 Morganella morganii S2 mnmA tRNA 2-thiouridine(34) synthase MnmA
NLDBIP_15895 NLDBIP_15895 Morganella morganii S4 mnmA tRNA 2-thiouridine(34) synthase MnmA
LHKJJB_15945 LHKJJB_15945 Morganella morganii S3 mnmA tRNA 2-thiouridine(34) synthase MnmA
HKOGLL_15065 HKOGLL_15065 Morganella morganii S5 mnmA tRNA 2-thiouridine(34) synthase MnmA
F4V73_RS07355 F4V73_RS07355 Morganella psychrotolerans mnmA tRNA 2-thiouridine(34) synthase MnmA
PMI_RS04365 PMI_RS04365 Proteus mirabilis HI4320 mnmA tRNA 2-thiouridine(34) synthase MnmA

Distribution of group_1940 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1940 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1940

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1940.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mnmA 7

Product

# Product Occurence
1 tRNA 2-thiouridine(34) synthase MnmA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0482 7 J Translation, ribosomal structure and biogenesis (J) tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00566 7 tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] Sulfur relay system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03054 7 tRNA methyl transferase HUP domain
PF20258 7 Aminomethyltransferase beta-barrel domain
PF20259 7 tRNA methyl transferase PRC-barrel domain

Annotations of the 512 SwissProt hits

Annotation Number of occurrences
Mitochondrial tRNA-specific 2-thiouridylase 1 8
Probable mitochondrial tRNA-specific 2-thiouridylase 1 1
Trifunctional protein RibF/MnmA 1
tRNA-specific 2-thiouridylase MnmA 475
tRNA-specific 2-thiouridylase MnmA 1 12
tRNA-specific 2-thiouridylase MnmA 2 12
tRNA-specific 2-thiouridylase MnmA 3 3

Protein length

Unique protein length 367

Protein length distribution